The ‘horseshoe effect’ in analyzing microbial niches; fecal microbiota transplantation (FMT) in immunocompromised individuals; effects of long-term ceftriaxone sodium administration on gut microbiota diversity; DNA extraction bias in soil microbial community analysis; and a multistrain probiotic clinical trial in NAFLD.
Events and jobs
Postdoctoral Fellow in Microbiology – University of Tennessee Health Science Center, Memphis, TN
QC Microbiology Analyst – Leidos – Frederick, MD
General microbiome
Uncovering the Horseshoe Effect in Microbial Analyses – James T. Morton – mSystems
Pregnancy and early life
Microbiome, autoimmunity, allergy, and helminth infection: The importance of the pregnancy period – Xian Chen – American Journal of Reproductive Immunology
Implications of intrapartum azithromycin on neonatal microbiota – Jenny Mei – The Lancet Infectious Diseases
Human respiratory microbiome
Restoring CFTR Function Reduces Airway Bacteria and Inflammation in People With Cystic Fibrosis and Chronic Lung Infections – Katherine B. Hisert – American Journal of Respiratory and Critical Care Medicine
Microbiome of the Lung in Patient with Idiopathic Pneumonia Syndrome (IPS) after HCT – Sachiko Seo – Biology of Blood and Marrow Transplantation
Oral and nasal microbiota in Parkinson’s disease – Pedro A.B. Pereira – Parkinsonism & Related Disorders
Human skin microbiome
N-acetylcysteine inhibits growth, adhesion and biofilm formation of Gram-positive skin pathogens – Daria Eroshenko – Microbial Pathogenesis
Human vaginal microbiome
Olegusella massiliensis gen. nov., sp. nov., strain KHD7T, a new bacterial genus isolated from the female genital tract of a patient with bacterial vaginosis – Khoudia Diop – Anaerobe
Bacterial species colonizing the vagina of healthy women are not associated with race – May A. Beamer – Anaerobe
The influence of sexual activity on the vaginal microbiota and Gardnerella vaginalis clade diversity in young women – Vodstrcil LA – PLoS One
Human gut microbiome
Long-term taxonomic and functional divergence from donor bacterial strains following fecal microbiota transplantation in immunocompromised patients – Eli Moss – bioRxiv
Long-term use of ceftriaxone sodium induced changes in gut microbiota and immune system – Yanjie Guo – Scientific Reports
Two dynamic regimes in the human gut microbiome – Sean M. Gibbons – PLoS Computational Biology
Review: The gut microbiome in human neurological disease: A review – Helen Tremlett – Annals of Neurology
The Effects of Moderate Whole Grain Consumption on Fasting Glucose and Lipids, Gastrointestinal Symptoms, and Microbiota – Danielle N. Cooper – Nutrients
Gut microbial profile is altered in primary biliary cholangitis and partially restored after UDCA therapy – Ruqi Tang – Gut
Randomised clinical trial: faecal microbiota transplantation for recurrent Clostridum difficile infection – fresh, or frozen, or lyophilised microbiota from a small pool of healthy donors delivered by colonoscopy – Z. D. Jiang – Alimentary Pharmacology and Therapeutics
Gut microbiota and systemic inflammation changes after bread consumption: The ingredients and the processing influence – Maykel Arias – Journal of Functional Foods
Review: Gut microbiome-based medical methodologies for early-stage disease prevention – Jing-Zhang Wong – Microbial Pathogenesis
The dual role of short fatty acid chains in the pathogenesis of autoimmune disease models – Mizuno M – PLoS One
Giardia duodenalis induces dysbiosis of human intestinal microbiota biofilms – Jennifer K. Beatty – International Journal for Parasitology
Animal experiments
Apple Polysaccharide inhibits microbial dysbiosis and chronic inflammation and modulates gut permeability in HFD-fed rats – Sheng Wang – International Journal of Biological Macromolecules
Animal microbiome
Metatranscriptomic profiling reveals linkages between the active rumen microbiome and feed efficiency in beef cattle – Fuyong Li – Applied and Environmental Microbiology
Plant, root, and soil microbiome
Review: Genomic dissection of host–microbe and microbe–microbe interactions for advanced plant breeding – Samuel Kroll – Current Opinion in Plant Biology
Differential sharing and distinct co-occurrence networks among spatially close bacterial microbiota of bark, mosses and lichens – Ines Aline Aschenbrenner – Molecular Ecology
The choice of the DNA extraction method may influence the outcome of the soil microbial community structure analysis – Sylwia Zielińska – Microbiology Open
High-resolution sequencing reveals unexplored archaeal diversity in freshwater wetland soils – Adrienne B. Narrowe – Environmental Microbiology
A comprehensive phylogenetic analysis of copper transporting P1B ATPases from bacteria of the Rhizobiales order uncovers multiplicity, diversity and novel taxonomic subtypes – Ciro Cubillas – Microbiology Open
Host-parasite-bacteria triangle: the microbiome of the parasitic weed Phelipanche aegyptiaca and tomato-Solanum lycopersicum (Mill.) as a host – Lilach Iasur Kruh – Frontiers in Plant Science
Diversity of root-associated fungi of Vaccinium mandarinorum along a human disturbance gradient in subtropical forests, China – Yanhua Zhang – Journal of Plant Ecology
Loss of soil microbial diversity may increase insecticide uptake by crop – Min Zhang – Agriculture, Ecosystems & Environment
The presence of aggressive ants is associated with insect visits to coffee flowers and floral microbe communities – Rachel L. Vannette – Basic and Applied Ecology
Metagenomic assessment of methane production-oxidation and nitrogen metabolism of long term manured systems in lowland rice paddy – P. Bhattacharyya – Science of the Total Environment
The Introduction of Woody Plants For Freshwater Wetland Restoration Alters The Archaeal Community Structure in Soil – Xiao-Yan Liu – Land Degradation & Development
A distinctive root-inhabiting denitrifying community with high N2O/(N2O+N2) product ratio – Chao Ai – Soil Biology and Biochemistry
Plant cultivars imprint the rhizosphere bacterial community composition and association networks – Yuji Jiang – Soil Biology and Biochemistry
Structural variability and niche differentiation in the rhizosphere and endosphere bacterial microbiome of field-grown poplar trees – Bram Beckers – Microbiome
Water and extremophile microbiome
Development of a prototype 16S rRNA gene-based microarray for monitoring planktonic actinobacteria in shrimp ponds – Jingjing Wang – International Aquatic Research
Serpentinization-influenced groundwater harbors extremely low diversity microbial communities adapted to high pH – Katrina I. Twing – Frontiers in Microbiology
Cold adaptation of the Antarctic haloarchaea Halohasta litchfieldiae and Halorubrum lacusprofundi – Timothy J. Williams – Environmental Microbiology
Diversity of crude oil-degrading bacteria and alkane hydroxylase (alkB) genes from the Qinghai-Tibet Plateau – Haozhi Long – Environmental Monitoring and Assessment
Ubiquitous and persistent Proteobacteria and other Gram-negative bacteria in drinking water – Ivone Vaz-Moreira – Science of the Total Environment
Acidicapsa ferrireducens sp. nov., Acidicapsa acidiphila sp. nov., and Granulicella acidiphila sp. nov.: novel acidobacteria isolated from metal-rich acidic waters – Carmen Falagán – Extremophiles
Synthetic extreme environments: overlooked sources of potential biotechnologically relevant microorganisms – Timothy Sibanda – Microbial Biotechnology
Acinetobacter halotolerans sp. nov., a novel halotolerant, alkalitolerant, and hydrocarbon degrading bacterium, isolated from soil – Ram Hari Dahal – Arhives of Microbiology
Physiological and comparative genomic analysis of Acidithiobacillus ferrivorans PQ33 provides psychrotolerant fitness evidence for oxidation at low temperature – Robert Ccorahua-Santo – Research in Microbiology
Genome-resolved metagenomics of a bioremediation system for degradation of thiocyanate in mine water containing suspended solid tailings – Sumayah F. Rahman – Microbiology Open
Food microbiology
Nondairy beverage produced by controlled fermentation with potential probiotic starter cultures of lactic acid bacteria and yeast – Ana Luiza Freire – International Journal of Food Microbiology
Probiotics / prebiotics
Targeting the Microbiota-Gut-Brain Axis: Prebiotics Have Anxiolytic and Antidepressant-like Effects and Reverse the Impact of Chronic Stress in Mice – Aurelijus Burokas – Biological Psychiatry
Review: Clinical effects of probiotics in cystic fibrosis patients: A systematic review – Stephanie Van Biervliet – Clinical Nutrition ESPEN
Effects of Multistrain Probiotic Supplementation on Glycemic and Inflammatory Indices in Patients with Nonalcoholic Fatty Liver Disease: A Double-Blind Randomized Clinical Trial – Abbaszadeh Sepideh – Journal of the American College of Nutrition
Microbes in the news
Glass Microbiology at the At-Bristol Science Centre – Culture Calling
Bacteria And Babies: A Scientific Debate – Part One – American Council on Science and Health
Reference: Delivery mode shapes the acquisition and structure of the initial microbiota across multiple body habitats in newborns – Maria G. Dominguez-Bello – PNAS
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