Our search alerts

Here are my search alerts and strategies that I use to create these daily posts. Updated April 2016. To read more about Microbiome Digest, click here.

PubMed alerts

  • ‘phyllosphere OR rhizosphere’ (1-5 articles every day)
  • ‘microbiome OR microbiota OR (microbial communities)’ (10-100 articles every day)

Google Alerts

  • archaea
  • bacteria
  • biofilm
  • host response
  • metagenome
  • metagenomics
  • microbiology
  • microbiome
  • microbiota
  • mothur
  • phage
  • phyloseq
  • preterm birth
  • qiime

Google Scholar Alerts

  • preterm birth microbiome
  • microbiome pyrosequencing
  • microbial communities
  • metagenome assembly
  • metabolomics microbiome
  • host response sepsis “16S”
  • Glyphosate microbiome
  • extremophiles
  • extremophile
  • dolphin microbiota
  • dolphin microbiome
  • chromosome conformation capture
  • arsenic microbiota
  • arsenic microbiome

Journal eTOC Alerts

 

  • ASM journals (mBio, IaI, JCM, mSystems, etc)
  • bioRxiv
  • BMC Microbiology
  • DNA Research
  • eLIFE
  • Environmental Science & Technology
  • Environmental Science & Technology Letters
  • Frontiers in Microbiology
  • Genome Biology
  • Genome Medicine
  • Gut
  • ISME Journal
  • Journal of Applied Microbiology
  • Journal of Infectious Diseases
  • Letters in Applied Microbiology
  • Marine Mammal Science
  • Molecular Microbiology
  • Nature journals (Nature, Nature Communications, Scientific Reports, Reviews Microbiology)
  • PeerJ
  • PLOS journals (PLOS Pathogens, NTD, Genetics, Computational Biology)
  • PNAS
  • Science
  • The Lancet

Publisher Alerts

Search terms usually something like: (“microbial communities” in All Fields OR “bacterial communities” in All Fields OR microbiome in All Fields OR microbiota in All Fields)

  • ACS Publications
  • BioMedCentral
  • HighWire Press
  • Science Direct
  • Wiley Online Library

Other Alerts

  • MicroBE.net
  • MicrobePost
  • Retraction Watch
  • Stanford Daily
  • STAT News
  • The Scientist
  • The Tree of Life

 

Advertisements