See you at the Seerave & MVIF Symposium next week!
General
Integrating multi-omics technologies to decipher microbiome functions – Tim Van Den Bossche – Nature Communications
Phylogenetic measures of the core microbiome – Bewick, S.A., Camper, B.T. – Microbiome
Gut microbiome
Gut microbiota composition outperforms chronological age in predicting systemic inflammation and incident disease risk – Carsten Eriksen – Nature Communications
Multi-kingdom gut microbiota analyses identify biomarkers of different types of pediatric short bowel syndrome – Qing-Qing Wu – mSystems
Maternal influences on infant gut microbiome and health – Trishla Sinha – Nature
Baseline gut microbiome and metabolome profiles predict weight loss after a structured lifestyle intervention – Benjamin Seethaler – Microbiome
Impact of pig farming activities on the gut microbiome and resistome of farmers: insights from metagenomics and Escherichia coli genomics – Tiejun Zhang – Microbiome
Oral microbiome
Mouth-to-gut microbial transmission signatures enable robust, non-invasive diagnosis of gastrointestinal cancers – Lae-Guen Jang – Cell Host & Microbe
Vaginal microbiome
Species and strain sharing in the vaginal microbiome of mothers and their adult daughters – Maria Pinedo-Bardales – Cell Reports
Bacterial community structure shapes the vaginal resistome during pregnancy – Nassim Boutouchent – npj Biofilms and Microbiomes
Modeling the human vaginal microbiome and its protection against pathogens using the replicator framework for invasion – Tomás Ferreira Amaro Freire – Microbiome
Animal microbiome
Probiotic and postbiotic treatment improves coral health and promotes specific metabolic and microbiome changes in situ during a heatwave – Erika P. Santoro – Cell Reports
Distinct gut viral communities across life stages in dairy cattle – Ryan Cook – Microbiome
Animal experiments
Lactobacillus gasseri postbiotics ameliorate age-related decline in endometrial receptivity – Meng Li – Cell Host & Microbe
Bioinformatics
Ground-truth in silico spike-ins reveal limits of microbiome biomarker recovery in colorectal cancer – André Salgado – bioRxiv
In harmony? A scoping review of methods to combine multiple 16S amplicon datasets – Zone Li – AJE Advances: Research in Epidemiology
Not every gene is special: Modelling scale controls the false discovery rate when analysing high-throughput sequencing data – Scott J. Dos Santos – PLOS Computational Biology
Microbiome Digest - Bik's Picks 