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Global microbiome
Advancing microbial ecology, microbiomes, and One Health in Africa: From regional initiatives to pan-African flagship programs – Mohamed Hijri – The ISME Journal
Gut microbiome
Divergent Resilience of Bacterial and Fungal Gut Microbiota After Colorectal Surgery: Insights From a Prospective Longitudinal Cohort Study – Simon Wetzel – MedComm
Epigenetic phase variation in the gut microbiome enhances bacterial adaptation – Mi Ni – Cell Host & Microbe
Dietary transition to an Indigenous Greenlandic diet induces instant shifts in gut microbiota composition – a pilot intervention study – Mads B. W. Bjørnsen – Frontiers in Microbiomes
Review: Next-generation probiotics: an outlook into current applications and future developments – Lara Kern – Nature Reviews Microbiology
Oral microbiome
Machine learning reveals microbiome differences by periodontitis severity – Soo Hyun Seo – PlosOne
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0349686
Animal microbiome
Integrated Responses: Multi-dimensional Evidence of Diet-Microbiome Coupling of Fish across a River Continuum in a Dry-Hot Valley – Yaqiu Liu – Global Ecology and Conservation
Ammonia oxidation and recalcitrant carbon degradation fuel mixotrophic growth in the symbiont community of a deep-sea sponge – Alessandro N. Garritano – Microbiome
Plant, root, soil microbiome
Low intra-microbiota antagonism underlies stable and protective barley root microbiota – Lisa Katharina Mahdi – bioRxiv
Bioinformatics
Microbe Decoder uncovers functional traits of microbes in microbiome datasets – Timothy J Hackmann – Nucleic Acids Research
ZipStrain Enables Rapid and Precise Strain-Resolved Metagenomics – Parsa Ghadermaz – bioRxiv
The elusive resistome: a global comparison reveals large discrepancies among detection pipelines – Juan S. Inda-Díaz – bioRxiv
Microbiome Digest - Bik's Picks 