General microbiome
Microbiome-associated human genetic variants impact phenome-wide disease risk – Markowitz et al. – PNAS
Microbial risk score for capturing microbial characteristics, integrating multi-omics data, and predicting disease risk – Wang et al. – Microbiome
[REVIEW]A framework for testing the impact of co-infections on host gut microbiomes – Schmid et al. – Animal Microbiome
Human vaginal microbiome
Vaginal microbiota and personal risk factors associated with HPV status conversion—A new approach to reduce the risk of cervical cancer? – Yang et al. – PLOS One
Human gut microbiome
[REVIEW]The role of the gut microbiota in multiple sclerosis – Correale, Hohlfeld & Baranzini
Specific gut microbiota alterations in essential tremor and its difference from Parkinson’s disease – Zhang et al. – NPJ Parkinson’s Disease
Identification of clinical and ecological determinants of strain engraftment after fecal microbiota transplantation using metagenomics – Podlesny et al. – Cell Reports Medicine
Alterations in gut microbiota of esophageal squamous cell carcinoma patients – Cheung et al. – Journal of Gastroenterology and Hepatology
Targeted suppression of human IBD-associated gut microbiota commensals by phage consortia for treatment of intestinal inflammation – Federici et al. – Cell
Animal microbiome
Camel milk microbiota: A culture-independent assessment – Rahmeh et al. – Food Research International
Effect of processing on the anti-inflammatory efficacy of cocoa in a high fat diet-induced mouse model of obesity – Weikart et al. – The Journal of Nutritional Biochemistry
The impacts of viral infection and subsequent antimicrobials on the microbiome-resistome of growing pigs – Gaire et al. – Microbiome
Plant, root, and soil microbiome
Soil microbial community structures are shaped by agricultural systems revealing little temporal variation – Fox, Widmer & Lüscher – Environmental Research
Water and extremophile microbiome (sea, rivers, lakes, glaciers, permafrost, high-salt)
The streamwater microbiome encodes hydrologic data across scales – URycki et al. – Science of The Total Environment
Bioinformatics / Data
[PREPRINT]Lake iTag measurements over nineteen years, introducing the limony dataset – Rohwer & McMahon – bioRxiv