General microbiome
The human bitter taste receptor T2R38 is broadly tuned for bacterial compounds – C Verbeurgt – PLoS One
Differential signal sensitivities can contribute to the stability of multispecies bacterial communities. – J Juhász – Biology Direct
Applying allometric theory to fungi – CA Aguilar-Trigueros – The ISME Journal
The Editorial on the Research Topic The Impact of Microorganisms on Consumption of Atmospheric Trace Gases – S Kolb – Frontiers in Microbiology
Human oral microbiome
Variations in oral microbiota associated with oral cancer. – H Zhao – Scientific Reports
Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection. – M Kuboniwa – Nature Microbiology
Human gut microbiome
Normalization of the microbiota in patients after treatment for colonic lesions – MA Sze – bioRxiv
Review: Modulation of the gut microbiome: a systematic review of the effect of bariatric surgery. – Y Guo – European Journal of Endocrinology
Urinary intermediates of tryptophan as indicators of the gut microbial metabolism. – T Pavlova – Analytica Chimica Acta
Recent urbanization in China is correlated with a Westernized microbiome encoding increased virulence and antibiotic resistance genes. – K Winglee – Microbiome
Continued Alcohol Misuse in Human Cirrhosis is Associated with An Impaired Gut-Liver Axis. – JS Bajaj – Alcoholism, Clinical and Experimental Research
Fructooligosaccharide (FOS) and Galactooligosaccharide (GOS) Increase Bifidobacterium but Reduce Butyrate Producing Bacteria with Adverse Glycemic Metabolism in healthy young population. – F Liu – Scientific Reports
Animal experiments
Experimental colitis delays and reduces the severity of collagen-induced arthritis in mice – J Hablot – PLoS One
Identification of a mouse Lactobacillus johnsonii strain with deconjugase activity against the FXR antagonist T-β-MCA – M DiMarzio – PLoS One
The effect of age on the intestinal mucus thickness, microbiota composition and immunity in relation to sex in mice – M Elderman – PLoS One
Review:Role of the gastrointestinal microbiota in small animal health and disease. – A Redfern – The Veterinary Record
Gut Microbiota and IL-17A: Physiological and Pathological Responses. – B Douzandeh-Mobarrez – Probiotics and Antimicrobial Proteins
Animal microbiome
The microbiota of water buffalo milk during mastitis – C Catozzi – PLoS One
What determines sclerobiont colonization on marine mollusk shells? – VO Agostini – PLoS One
Season, but not symbiont state, drives microbiome structure in the temperate coral Astrangia poculata. – KH Sharp – Microbiome
Metagenomic analysis of bacterial community structure and diversity of lignocellulolytic bacteria in Vietnamese native goat rumen. – HT Do – Asian-Australasian Journal of Animal Sciences
Comparative analysis of midgut bacterial communities in three aedine mosquito species from dengue-endemic and non-endemic areas of Rajasthan, India. – SS Charan – Medical and Veterinary Entomology
Microbiome of Pacific Whiteleg shrimp reveals differential bacterial community composition between Wild, Aquacultured and AHPND/EMS outbreak conditions. – F Cornejo-Granados – Scientific Reports
Plant, root, and soil microbiome
Evolution with a seed bank: the population genetic consequences of microbial dormancy – WR Shoemaker – bioRxiv
Longispora urticae sp. nov., isolated from rhizosphere soil of Urtica urens L., and emended descriptions of the species Longispora albida and Longisporafulva. – C Piao – International Journal of Systematic and Evolutionary Microbiology
Actinomycetes benefaction role in soil and plant health. – AA Bhatti – Microbial Pathogenesis
Environmental parameters altered by climate change affect the activity of soil microorganisms involved in bioremediation – I Alkorta – FEMS Microbiology Letters
Micropredator niche differentiation between bulk soil and rhizosphere of an agricultural soil depends on bacterial prey. – L Zhang – FEMS Microbiology Ecology
Soil microbial communities drive the resistance of ecosystem multifunctionality to global change in drylands across the globe. – M Delgado-Baquerizo – Ecology Letters
Paenibacillus arcticus sp. nov., isolated from Arctic soil. – IT Cha – International Journal of Systematic and Evolutionary Microbiology
Mineral phosphorus fertilization modulates interactions between maize, rhizosphere yeasts and arbuscular mycorrhizal fungi – M Sarabia – Rhizosphere
Zinc Solubilizing Bacillus cereus and related species Modulates Growth, Yield and Zinc Biofortification of Soybean and Wheat Seeds Cultivated in Central India – R Khande – Rhizosphere
Utilisation of mucilage C by microbial communities under drought – MA Ahmed – Biology and Fertility of Soils
Built environment
Walker occupancy has an impact on changing airborne bacterial communities in an underground pedestrian space, as small-dust particles increased with raising both temperature and humidity – T Okubo – PLoS One
Food microbiology
Diversity and dynamics stability of bacterial community in traditional solid-state fermentation of Qishan vinegar – X Gan – Annals of Microbiology
Phages and viruses
Isolation and identification of enteroviruses from sewage and sewage-contaminated water samples from Ibadan, Nigeria, 2012-2013. – JA Adeniji – bioRxiv
The virome of Drosophila suzukii, an invasive pest of soft fruit – NC Medd – bioRxiv
Immune Loss as a Driver of Coexistence During Host-Phage Coevolution – JL Weissman – bioRxiv
Bioinformatics
Bioinformatics in the Netherlands: the value of a nationwide community – CWG van Gelder – Briefings in Bioinformatics
Techniques
Methods matter: Influential purification and analysis parameters for intracellular parasite metabolomics – MA Carey – bioRxiv
COREMIC: a web-tool to search for a root-zone associated CORE MICrobiome – RR Rodrigues – bioRxiv
Quorum sensing improves current output with Acidithiobacillus ferrooxidans. – N Chabert – Microbial Biotechnology
Transcriptome analysis of Pseudostellaria heterophylla in response to the infection of pathogenic Fusarium oxysporum. – X Qin – BMC Plant Biology
Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor. – Y Daquerre – BMC Genomics
Microbes in the news
Rocks, not bacteria, triggered Earth’s oxidation – Cosmos
The Table At Your Favorite Restaurant May Be Way Grosser Than You ThoughtThe Table At Your Favorite Restaurant May Be Way Grosser Than You Thought – Men’s Health
Researchers unlock potential pathway to treat flesh-eating bacteria – Phys.org
Revealed: The nasty infections you can pick up at the gym – and how to avoid deadly bacteria lingering on your workout gear – Daily Mail Online
Flagship seeks $500M for sixth fund; unveils another microbiome firm – Fierce Biotech
CAN SPRAYING BACTERIA IN YOUR FACE ACTUALLY HAVE HEALTH BENEFITS? – CDA Press
Space-Grown Bacteria Could Pose Major Problems for Astronauts – Health Line
See jerkface bacteria hiding in tumors and gobbling chemotherapy drugs – Ars Technica
How BIOHM’s At Home Candida Test Is Giving Consumers Peace of Mind – Forbes
