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Gut microbiome
Gut microbial diversity and inferred capacity to produce short-chain fatty acids are associated with acute stress reactivity in healthy adults – Thomas Karner – Neurobiology of Stress
Non-concussive head impacts sustained during American football correlate with changes in gut microbiome diversity and composition – Zachary J. Pelland – PlosOne
Gut microbiome is associated with recurrence-free survival in patients with resected high-risk melanoma receiving adjuvant immune checkpoint blockade – Mykhaylo Usyk – Cell
Genome-wide sweeps create ecological units in the human gut microbiome – Xiaoqian Annie Yu – Nature
Gut microbiome features associated with Bifidobacterium colonization predict personalized probiotic persistence patterns – Tarini Shankar Ghosh – Nature Communications
Biogeography-associated emergence of enhanced oxygen tolerance in the abundant human gut commensal Segatella copri – Youssef El Mouali – Cell Host & Microbe
Review: The impact of artificial sweeteners on bacterial physiology and the microbiome – Ciaram Staber – Trends in Microbiology
Habitual coffee intake shapes the gut microbiome and modifies host physiology and cognition – Serena Boscaini – Nature Communications
Urinary microbiome
Fatty acid auxotrophy as driver of Lactobacillus symbiosis in the female urinary tract – Michael L. Neugent – BioRxiv
Oral microbiome
Integrative host–microbiome modeling uncovers the implication of oral–gut translocation in advanced cirrhosis – Yi Jin – iMeta
Strain-level translocation and enrichment dynamics of oral bacteria in the lower gastrointestinal tract of stunted children – Simon Yersin – Gut Microbes
Plant microbiome
The Anna Karenina principle in the assembly of plant microbiome under pathogen stress – Da Li – npj Biofilms and Microbiomes
Bioinformatics
Evaluating Reference-Independent Pipelines for the Detection of Spreading Organisms in Metagenomic Datasets – Nikolay Sergeevich Popov – BioRxiv
Learning the Language of the Microbiome with Transformers – Neythen J Treloar – BioRxiv
Holobiont
Viewing ourselves as nature: Holobiont literacy influences nature connectedness – Jake M. Robinson – Ambio
Microbiome Digest - Bik's Picks 