Virome papers

Just a bunch of recent research or older review papers on viruses associated with certain environments. Published October 2017.

General virome papers

Editorial: Virus Discovery by Metagenomics: The (Im)possibilities – Bas E. Dutilh – Frontiers in Microbiology – September 2017

Benchmarking viromics: an in silico evaluation of metagenome-enabled estimates of viral community composition and diversity – Simon Roux – September 2017

Human virome papers

Characterization of the human DNA gut virome across populations with different subsistence strategies and geographical origin – Simone Rampelli – Environmental Microbiology – October 2017

Review article: the human intestinal virome in health and disease – S. R. Carding – Alimentary Pharmacology and Therapeutics – September 2017

The enteric virome in hematopoietic stem cell transplantation: ready for its close-up – Shuichiro Takashima & Alan M Hanash – Nature Medicine – September 2017

An Anthropocentric View of the Virosphere-Host Relationship – Rodrigo A. L. Rodrigues – Frontiers in Microbiology – August 2017

The eukaryotic gut virome in hematopoietic stem cell transplantation: new clues in enteric graft-versus-host disease -Jérôme Legoff – Nature Medicine – July 2017

The blood DNA virome in 8,000 humans – Ahmed Moustafa – PLOS Pathogens – March 2017

The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome – Geoffrey D Hannigan – mBio – October 2015

Review: The Virome in Host Health and Disease – Ken Cadwell – Immunity – May 2015

Expanding the Role of the Virome: Commensalism in the Gut – Ken Cadwell – Journal of Virology – February 2015

New Viruses in Idiopathic Human Diarrhea Cases, the Netherlands – Saskia L. Smits – Emerging Infectious Diseases – July 2014

Kingdom-Agnostic Metagenomics and the Importance of Complete Characterization of Enteric Microbial Communities – Jason M. Norman – Gastroenterology – May 2014

The human virome: new tools and concepts – Marc Lecuit, Marc Eloit – Trends in Microbiology – October 2013

Virome genomics: a tool for defining the human virome – Kristine M Wylie – Current Opinion in Microbiology – August 2013

Emerging view of the human virome – Kristine M. Wylie – Translational Research – October 2012

Genome–virome interactions: examining the role of common viral infections in complex disease – Ellen F. Foxman & Akiko Iwasaki – Nature Reviews Microbiology – April 2011

Metagenomic Analysis of Respiratory Tract DNA Viral Communities in Cystic Fibrosis and Non-Cystic Fibrosis Individuals – Dana Willner – PLOS ONE – October 2009

Redefining Chronic Viral Infection – Herbert W. Virgin – Cell – July 2009

Animal virome papers

Identification of diverse viruses in upper respiratory samples in dromedary camels from United Arab Emirates – Yan Li – PLOS ONE – September 2017

Virome analysis for identification of novel mammalian viruses in bats from Southeast China – Dan Hu – Scientific Reports – September 2017

Characterizing the virome of Ixodes ricinus ticks from northern Europe – John H.-O. Pettersson – Scientific Reports – September 2017

High-Resolution Metatranscriptomics Reveals the Ecological Dynamics of Mosquito-Associated RNA Viruses in Western Australia – Mang Shi – Journal of Virology – September 2017

Association of coral algal symbionts with a diverse viral community responsive to heat shock – Jan D. Brüwer – BMC Microbiology – August 2017

Virome comparisons in wild-diseased and healthy captive giant pandas – Wen Zhang – Microbiome – August 2017

Draft Genome Sequences of Six Novel Picorna-Like Viruses from Washington State Spiders – Ryan C. Shea – Genome Announcements – March 2017

Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families – Jemma L. Geoghega – PLOS Pathogens – February 2017

Redefining the invertebrate RNA virosphere – Mang Shi – Nature – November 2016

Deciphering the bat virome catalog to better understand the ecological diversity of bat viruses and the bat origin of emerging infectious diseases – Zhiqiang Wu – The ISME Journal – August 2015

Cross-species transmission and emergence of novel viruses from birds – Jasper Fuk-Woo Chan – Current Opinion in Virology – February 2015

The Virome in Mammalian Physiology and Disease – Herbert W. Virgin – Cell – March 2014

Environmental virome papers

Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory – Kurt E Williamson – Annual Review of Virology – September 2017

Counts and sequences, observations that continue to change our understanding of viruses in nature – K. Eri Wommack – Journal of Microbiology – March 2015

The global virome: not as big as we thought? – J Cesar Ignacio-Espinoza – Current Opinion in Virology – October 2013

Popular science articles

Gut viruses tied to potentially deadly complication of bone marrow transplant – Devika Bansal – Medical Xpress – August 2017

Opinion: The Virome and the Anti-vaccination Debate – Stephan Guttinger – The Scientist – 2017

Finding the world’s unknown viruses — before they find us – Helen Branswell – STAT Health – December 2016

Viruses of the Human Body. Some of our resident viruses may be beneficial – Eric Delwart – The Scientist – November 2016

Researchers complete unprecedented study of the global virome Researchers complete unprecedented study of the global virome – Katherine Lindemann – ResearchGate – August 2016

90 percent of skin-based viruses represent viral ‘dark matter,’ scientists reveal – Science Daily – November 2015

Bacterial Microbiome Move Over: the Gut Virome Makes Its Debut – Lara C. Pullen – Medscape – November 2014