Greetings!
Today’s digest is heavy on environmental microbiology with topics ranging from marine microplastics to carbon budgets to kitchen waste. I want to especially highlight a study that examines the phyllosphere of the mānuka. They found that the mānuka, or tea tree, has a stable core microbiome and variation in the non-core taxa is explained by biogeographical patterns.
Enjoy!
Events and jobs
Virtual Microbiome Bioinformatics Qiime2 Workshop – October 5-9, 2020
General microbiome
Opinion: Oceanic hitchhikers – Assessing pathogen risks from marine microplastic – Bowley et al. – Trends in Microbiology
Multi-site human microbiome
Analysis of the composition and functions of the microbiome in diabetic foot osteomyelitis based on 16S rRNA and metagenome sequencing technology – Mengchen et al. – Diabetes
Animal experiments
Developmental stage-associated microbiota profile of the peach fruit fly, Bactrocera zonata (Diptera: Tephritidae) and their functional prediction using 16S rRNA gene metabarcoding sequencing – Naaz et al. – 3 Biotech
Plant, root, and soil microbiome
A core phyllosphere microbiome exists across distant populations of a tree species indigenous to New Zealand – Noble et al. – PLOS One
Water and extremophile microbiome
Carbon budgets for soil and plants respond to long-term warming in an Alaskan boreal forest – Alster et al. – Biogeochemistry
First insights to the microbial communities in the plant process water of the multi-metal Kevitsa mine – Bomberg et al. – Research in Microbiology
Halomicroarcula amylolytica sp. nov., a novel halophilic archaeon isolated from a salt mine – Chen et al. – International Journal of Systematic and Evolutionary Microbiology
Spatial patterns of microbial communities across surface waters of the Great Barrier Reef – Frade et al. – Communications Biology
Isolation and characterization of a novel acidophilic zero-valent sulfur- and ferric iron-respiring Firmicute – Holanda and Johnson – Research and Microbiology
Combining physicochemical properties and microbiome data to evaluate the water quality of South African drinking water production plants – Maguvu et al. – PLOS One
Transient dynamics of archaea and bacteria in sediments and brine Across a salinity gradient in a solar saltern of Goa, India – Mani et al. – Frontiers in Microbiology
Diversity and distribution of cultivable fungi present in acid sulphate soils in chronosequence under para-periglacial conditions in King George Island, Antarctica – Porto et al. – Extremophiles
Investigation of the ecological roles of putative keystone taxa during tailing revegetation – Sun et al. – Environmental Science & Technology
Geochemistry and microbiology predict environmental niches with conditions favoring potential microbial activity in the Bakken shale – Tinker et al. – Frontiers in Microbiology
Spatial patterns of selenium and profiling of Se-tolerant Bacillus strains in Shiwalik foot-hills – Tiwana et al. – Geomicrobiology Journal
Bacterial laccase of Anoxybacillus ayderensis SK3-4 from hot springs showing potential for industrial dye decolorization – Wang et al. – Annals of Microbiology
Built environment
Comparison of microbial communities during anaerobic digestion of kitchen waste: Effect of substrate sources and temperatures – Jiang et al. – Bioresource Technology
Microbiome Digest - Bik's Picks 