June 9 , 2026

Human Microbiome

Remodelling of cystic fibrosis respiratory microbiota in response to extended elexacaftor–tezacaftor–ivacaftor therapy – Helen Gavillet – microbiome

Metabolic host-microbe crosstalk in stabilization of epithelial HIF – Alexander S. Dowdel – microbiome

Animal Microbiome

Reproductive aging drives deterministic microbiota assembly to mitigate uterine oxidative phosphorylation impairment via spermidine production in laying hens – Dong Dai – microbiome

Gut bacterial regulation of primate adaptive thermogenesis at high altitude -Xiaochen Wang – microbiome

Livestock Microbiome

Yeast culture promotes butyrate produced fibrolytic bacteria as intracellular hydrogen sink in the rumen – Li Wang – microbiome

Plant Microbiome

Deterministic assembly of rhizosphere bacterial community enables predictable and stable suppression of Verticillium wilt via microbial homeostasis – jiamin Ai – microbiome

Steering root-associated microbiomes via direct and soil legacy effects of neighbors – Mireadili Kuerban – microbiome

Biosynthesized selenium nanoparticles increase soybean resistance to root rot by recruiting beneficial microbes and reprogramming host metabolism – Haixu Liu – microbiome

Environmental / Built Microbiome

Longitudinal analysis of stowaway microorganisms aboard modules and cargo spacecraft of the Chinese Space Station – Ying Zhang – microbiome

Marine Microbiome

Ammonia oxidation and recalcitrant carbon degradation fuel mixotrophic growth in the symbiont community of a deep-sea sponge – Alessandro N. Garritano – microbiome

June 4 , 2026

Gut Microbiome

Associations between body composition and gut microbiota in female college students with and without dance training – Caifang Qiu – PLOS ONE

Imaging the impact of rotifer consumption on bacterial behaviors in the zebrafish gut – Susana Marquez Rosales – PLOS ONE

Environmental Microbiome

The livestock drinking water system as an active reservoir for antimicrobial resistance: A systematic review and one health gap analysis – Sujan Adhikar – PLOS ONE

Viral Microbiome

ViralMultiNet: A structure-aware multimodal framework for viral protein function prediction in wastewater surveillance – FuGuo Liu – PLOS ONE

Virological investigation and comparative genomic analysis of elephant endotheliotropic herpesvirus 1B infection in an Australian captive herd of Asian elephants (Elephas maximus) – Jack W Wheelahan – PLOS ONE

Expanding diversity of tick-borne phleboviruses (Phlebovirus mukawaense, Mudanjiang phlebovirus, Gomselga Virus, and Onega tick phlebovirus) in Russia – Mikhail Y Kartasho – PLOS ONE

Phage / Mobile Genetic Elements

Phage-plasmid-like elements are found throughout diverse environments and encode niche-specific functional traits – James I Mulle – PLOS ONE

Microbiological quality assessment of potential pathogenic bacteria and multidrug resistance patterns in commercial electrolyte drinks in Dhaka, Bangladesh – Sananda Saha – PLOS ONE

Pathogen & Disease-related Microbiology

Leishmania major virulence attenuation in vitro: An old conundrum revisited in the omics era – Evgeny S Gerasimov – PLOS ONE

Microbiological quality assessment of potential pathogenic bacteria and multidrug resistance patterns in commercial electrolyte drinks in Dhaka, Bangladesh – Sananda Saha – PLOS ONE

Microbiome Tools / Bioinformatics / Methods

TIPP-SD: A new method for species detection in microbiomes – Chengze Shen – PLOS ONE

AgrOmicSo: A client-server interface for accessible large-scale analysis of next-generation sequencing data – Dong-Jun Lee – PLOS ONE

Antimicrobial Resistance (AMR Microbiome)

The livestock drinking water system as an active reservoir for antimicrobial resistance: A systematic review and one health gap analysis
Sujan Adhikar

April 29 , 2026

Gut microbiome

Gut microbiota induces dysspermatogenesis via microbial-derived phenylacetylglycine in Ggt1-deficient mice – Jinhua Tang – Microbiome

Puerarin modulates the gut-liver-ovarian axis to ameliorate reproductive aging in breeder hens – Zhenwu Huang – microbiome

Gastrointestinal microbial nitrogen metabolic landscape underlies nitrogen utilization efficiency of goats fed distinct dietary protein sources – Yechan Zhao – microbiome

Environmental Microbiome

Unveiling microbial risks in Chinese household dust: a comprehensive analysis from absolute abundance to virulence unit – Lu Long – microbiome

Livestock Microbiome

Curcumin modulates hepatic pyroptosis-autophagy crosstalk induced by aflatoxin B1 via rumen microbiota-blood-liver axis – Tongwei Liu – microbiome

Plant Microbiome

Metabolome-driven rhizosphere microbiome assembly determining the health of medicinal herb (Angelica sinensis) against root rot – Chuan You – microbiome

Microbiome & Cancer / Immunology

Trimethylamine-producing microbe Bacillus megaterium KCTC 3007 promotes antitumor immunity in endometrial cancer via type I interferon response pathways – Kyungchan Min – microbiome

April 17,2026

See you next week at MVIF!

#MVIF 48 starts next week! Free registration: cassyni.com/s/mvif-48⭐️ Highlights:🇺🇸 Rachel R. Rock🇺🇸 @pamferretti.bsky.social ⭐️ Keynote:🇦🇺 @pam-engelberts.bsky.social and @jamesvolmer.bsky.social ⭐️ Talks: 🇨🇳 Linxing Chen🇨🇳 Zhemin Zhou🇦🇺 Hoai-An Nguyen

Microbiome Virtual International Forum (@microbiomevif.bsky.social) 2026-04-13T11:02:11.436Z


Gut microbiome

Associations of the gut microbiome and cardiometabolic risk in adolescence: the HOME study – Jennifer L. Arzu – BMC Medical Genomics 

Insect Gut Microbiota as a Reservoir of Industrially Relevant Enzymes: A Comprehensive Review – Aswin Viswan – Microbial Ecology

Respiratory Microbiome

The commensal microbiome in respiratory tract tumors: From oncogenic mechanisms to clinical translation – Jiale Yu – Journal of Advanced Research

Bacteria of the lung microbiome and health biomarkers in chronic airway disease: a systematic review and meta-analysis – Lucia Grassi – npj Biofilms Microbiomes

Animal Microbiome

Multi-omics revealed the effects of rumen to blood path on early lactation performance in transition dairy cows – Guangfu Tang – Microbiome

Spiroplasma Display an Intricate Continuum of Infection Heterogeneity and Persistence in Myrmica Ants – Diego Castillo Franco – Molecular Ecology

Oral Microbiome

Loss of salivary agglutinin induces changes in the salivary microbiome and accelerates development of oral cancer – Marcell Costa de Medeiros – Microbiome

Water Microbiome

Ecological water replenishment reshapes the river microbiome along an urban-rural gradient: Enhanced diversity but compromised stability – Hongyuan Tian – Journal of Hydrology: Regional Studies

Soil Microbiome

Reduced legacy precipitation decreases microbial community growth efficiency and alters soil organic carbon in a California grassland – Linnea K. Hernandez – Microbiome

Impact of microbial consortia and fertilization regimes on the soil microbiome in maize field trials – Nils Kleinbölting – Scientific Reports

Plant Microbiome

Phenotypic resistance profiles and resistome variations between endophytic and epiphytic bacteria in apple fruits – Denis Kiplimo – Environmental Microbiome

Plant spatial compartmentalization buffers bacteriome structure and function under antibiotic stress – Caryn Kgokonyane Lenonyane – Scientific Reports

Bioinformatics

Pangenome-based design of strain-specific primers enables precise monitoring of bacteria in human microbiome intervention trials – Tom Eilers – Scientific Reports

Predicted meta-omics: A potential solution to multi-omics data scarcity in microbiome studies – Bianca-Maria Cosma – PLOS One

Genomic characterization of Comamonas kerstersii isolated from diarrheal patients in Bangladesh – Noshin Ibnat Rib – PLOS One

I had the joy of giving a kindergarten workshop: “Bacteria in and around us!” 🦠✨To spark their imagination and start our discussion, I showed them the beautiful @contamclub.bsky.social 2026 calendar, full of vividly colored and uniquely shaped bacterial colonies.1/3

Svetlana Ugarcina Perovic (@svetlanaup.bsky.social) 2026-04-16T10:46:01.481Z

March 31,2026

Human Microbiome

The interplay between Peptostreptococcus and Fusobacterium as novel signatures in colorectal cancer recurrence – Yunhui Zhang – microbime

Dysbiosis of the nasal microbiome is associated with prospective acute exacerbation of COPD – Cristian Roca – microbiome

Water–vapor treatment of shower systems in healthcare facilities: reshaping built-environment microbiomes to improve Legionella control and protect at-risk patients – Tian You – microbiome

Animal Microbiome

Limosilactobacillus reuteri enhances production performance and ovarian function via modulation of the gut-ovary axis in laying hens – Yanchao Geng – microbiome

Heat stress suppresses lactation through potential rumen-mammary communication mediated by extracellular vesicles: integrated analysis of microbiome, metabolome, and miRNA profiles – Qi Huang – microbiome

Characterization of age-related changes in the gut microbiome and metabolome of Kunming dogs and their associations with police performance – Le Xu – microbiome

plant microbiome

Differential contributions of an antimicrobial effector from Verticillium dahliae to virulence and tomato microbiota assembly across natural soils – Wilko Punt – microbiome

Environmental & Data Microbiome

Microbiome Datahub: an open-access platform integrating environmental metadata, taxonomy, and functional annotation for comprehensive metagenome-assembled genome datasets – Hiroshi Mori – mi9crobiome

January 29, 2026

Animal microbiome

Host genetic background and environment have different effects on the establishment and structure of the adult worker honey bee gut microbiota – Breven Stark – PLOS ONE

Microbiota discovered in scorpion venom – Barbara Murdoch – PLOS ONE


Animal experiments / Disease models

Intestinal decontamination with rifaximin attenuates LSEC dysfunction and liver fibrosis in mice – Tingting Su – PLOS ONE

Periplaneta americana extract ameliorates recurrent oral ulcers in rats by enhancing the intestinal epithelial barrier and regulating gut microbiota – Kailing Li – PLOS ONE

Formononetin ameliorates SP-induced urticaria in mice via suppressing TAK1/MAK signaling pathway -Yan Wu –PLOS ONE

Lipopolysaccharide induced mouse depression model can better simulate changes in peripheral blood FFAs in alMDD -Jincai Pan –PLOS ONE


Human microbiome (gut & reproductive)

Stool and vaginal microbiome profiles patterns among Black and White endometrial cancer survivors: A pilot study in North Carolina – Mu Jin – PLOS ONE


Infection, immunity & host–microbe interactions

Examining the role of IgA in a persistent model of Staphylococcus aureus colonization – Yunys Perez-Betancourt – PLOS Pathogens

Diversify and conquer: How effector diversity is shaped by host–microbe co-evolution -Marion C Müller – PLOS Pathogens

Oo-No: Ophidiomyces ophidiicola–bacterial interactions and the role of skin lipids in development of ophidiomycosis – Jason W Dallas – PLOS Pathogens


Probiotics & food microbiology

In-vitro evaluation of probiotic potential of gut microbes isolated from retail chicken – Sangram Biswas – PLOS ONE


Antimicrobial resistance & clinical microbiology

Extended-spectrum β-lactamase and carbapenemase-producing Enterobacterales among adult patients and their family members at Tikur Anbessa Specialized Hospital, Addis Ababa, Ethiopia – Dessie Abera – PLOS ONE


Microbiome methods & bioinformatics

PCR bias impacts microbiome ecological analyses – Dharmik R Rathod – PLOS Computational Biology

CoSMIC: A hybrid approach for large-scale, high-resolution microbial profiling of novel niches – Maor Knafo – PLOS ONE


Environmental & applied microbiology

Developing a simple, cost-effective proof-of-concept vaccine candidate against EHEC for cattle – Cecilia M Duarte – PLOS ONE

Preventive effect of bentonite against pyoderma via direct binding capability of staphylococci – Mao Kaneki – PLOS ONE

Ultraviolet light and polyethylene glycol as environmental cleaning agents to reduce contamination of Pseudogymnoascus destructans in bat hibernacula – Alyssa J Stulberg – PLOS ONE


Water, pollution & human exposure

Micro- and nanoplastics in biological samples following a drinking water intervention in Barcelona, Spain – Emma Calikanzaros – PLOS Water


Human disease & biomarkers

Evidence of an allostatic response by intestinal tissues following induction of joint inflammation – Meghan M Moran – PLOS ONE

Multi-modal data to identify key factors influencing lung injury in ARDS patients undergoing invasive mechanical ventilation: A prospective multi-center observational study protocol – Zhimei Duan – PLOS ONE

Integrative genomic analysis reveals DHX58 as a key player in gastric cancer – Yan Li – PLOS ONE

Identifying biomarkers for diagnosis and disease activity monitoring in PSC-IBD and UC through proteomic profiling: A prospective study protocol – Ondrej Fabian – PLOS ONE

S100-alarmins, antenatal corticosteroids and the risk of late-onset sepsis in preterm infants – Gloria Kessler – PLOS ONE

Exploring the role of the key gene TNFAIP3 between periodontitis and influenza A through bioinformatic analysis and molecular docking – Mingxiang Xu – PLOS ONE

GC-MS based bioactive profiling of Phyllanthus niruri and its antibacterial potential – Zubair Khalid Labu – PLOS ONE

January 28, 2026

Reproductive / Urogenital Microbiome & Host–Pathogen Interactions

The interactive relationship between Fusobacterium necrophorum, Bacteroides pyogenes, and Porphyromonas levii in driving inflammatory uterine diseaseDianjun Cao – microbiome

 Gut Microbiome, Diet, and Host Health

Total and different types of olive oil consumption, gut microbiota, and cognitive function changes in older adultsJiaqi Ni – microbiome

Environmental Microbiome & Antimicrobial Resistance (Resistome)

Beyond borders: plasmids drive a shared antibiotic resistome in European urban water systems

Wanli He – microbiome

Spatial and temporal patterns of public transit aerobiomesRussell J. S. Or – microbiome

Food Chain, Meat Microbiome & Resistome Dynamics

Microbiome and resistome successions in pig carcasses and fresh pork meat throughout slaughtering, processing and shelf-lifeElena Fernández-Trapote – microbiome

Microbiome–Immune System Interactions

Commensal microbe-derived butyrate enhances T follicular helper cell function to boost mucosal vaccine efficacyHaeun Ko – microbiome

Animal microbiome

A culturomics approach reveals cross-feeding capacity of intestinal pig bacteria upon release of inositol from phytateLena-Sophie Paul – microbiome

January 16, 2026

Human Microbiome

The testobolome in microbial testosterone metabolism and human health – Liisa Veerus –  
npj biofilms and microbiomes 

Multi-omic definition of metabolic obesity through adipose tissue–microbiome interactions – Rima M. Chakaroun – Nature Medicine

Gut microbiome

The microbiome at the centre of NAD+ supplementation – Youngjae Jo – Nature Metabolism

Meta-analysis of H. pylori and the gut microbiome interactions and clinical outcomes – Xiongjian Wu – Frontiers in Cellular and Infection Microbiology

Environmental Microbiome

High microbial diversity in glacial habitats uncoupled from the specialized microbiomes of resident chironomid fauna – Valeria Lencioni – PLOS One

Bacterial communities show distinctive spatial diversity patterns in productive truffle orchards amended with peat-based substrate – Pedro Marco –  Environmental Microbiome

Plant Microbiome

Root Triterpenoid Metabolites Drive the Assembly and Feedback Regulation of the Rhizosphere Microbiome During Flowering to Senescence in Rhododendron hybridum – Fei Shan – Frontiers in Microbiology

Drought-Tolerant Rhizobacterial Consortia Enhance Grapevine Growth and Tolerance to Water Deficit – Ginevra Canavera – Frontiers in Plant Science

Bioinformatics

Integrative analysis across metagenomic taxonomic classifiers: A case study of the gut microbiome in aging and longevity in the Integrative Longevity Omics Study – Tanya T. Karagiannis – PLOS Computational Biology

Novel artificial selection method improves function of simulated microbial communities – Bjorn Vessman – PLOS Computational Biology

December 12, 2025

Animal microbiome

Human-derived fecal virome transplantation (FVT) reshapes the murine gut microbiota and virome, enhancing glucose regulation – Cervantes-Echeverría – PLOS ONE

TTSS-2 virulence drives inflammatory destruction of the gut epithelial barrier and modulates inflammatory response profiles in the Salmonella-infected mouse gut – Enz – PLOS Pathogens

Aspartic protease 2 from Trichinella spiralis excretion/secretion products hydrolyzes tight junctions of intestinal epithelial cells – Long – PLOS NTDs

Endosymbiont hijacking of acylcarnitines regulates insect vector fecundity by suppressing the viability of stored sperm – Weiss – PLOS Genetics

Development and validation of a quantitative real-time PCR assay for enumeration of Clostridium sporogenes in meat products – Schuller – PLOS ONE

Rooting for data: A FAIR research data management environment for Plant-Microbe collaboration – Dröst – PLOS Pathogens (Plant microbiome)

Prolonged starvation deepens quiescence in Vasa2/Piwi1-expressing cells of a sea anemone – Pascual-Carreras – PLOS Biology


Host–microbe interactions / Immunology

Gut bacteria induce heterologous immune priming in Rhodnius prolixus encompassing humoral and cellular responses – Gilliland – PLOS Pathogens

Dietary flavonoids may improve insulin resistance: NHANES + in vitro – Sui – PLOS ONE

Antiviral and immune-modulatory activities of STING agonists in persistent HBV infection – Wang – PLOS Pathogens

Endosymbiont metabolic manipulation affecting insect reproduction – Weiss – PLOS Genetics


Human clinical studies / Metabolism

Effects of risperidone on amino acid metabolism, glucose & kidney function – Oshima – PLOS ONE

Association between Anti-H. pylori IgG and coronary heart disease – Wang – PLOS ONE

Benefits of psychosocial support for adolescent mothers in Uganda – Nakyaze – PLOS ONE

Modifiable risk factors for inflammatory bowel disease in Kuwait – Alhasan – PLOS ONE

Exposure to polystyrene nanoparticles disrupts trophoblast mitochondrial homeostasis – Hao – PLOS ONE

Molecular mechanisms of lipid metabolism abnormalities driving sepsis & atrial fibrillation – Ou – PLOS ONE

Multi-dimensional analysis of global colorectal cancer burden (1990–2021) – Sun – PLOS ONE


Computational / Modeling

Identification of dynamic models of microbial communities – Paredes-Vázquez – PLOS Comp Biol

Accuracy limits of the Lotka–Volterra model in strongly coupled microbial systems – Mustri – PLOS Comp Biol


Plant, soil & ecological microbiome

High-resolution melting assays for discrimination of fungal pathogens in grapevine trunk disease – Azevedo-Nogueira – PLOS ONE

Rooting for data: FAIR data environment for plant–microbe collaboration – Dröst – PLOS Pathogens


Environmental health / Climate / Water

Bridging water, health and climate: A call to action – Hedke – PLOS Water

November 14, 2025

Gut Microbiome & Host Health

Sleep deprivation disrupts diurnal rhythmicity of gut microbiota and blood inflammatory cytokines in mice — Weiran Shan et al. (PLOS ONE)

Chemical modulation of gut bacterial metabolism induces colanic acid and extends the lifespan of nematode and mammalian hosts — Guo Hu et al. (PLOS Biology)

The role of hypothyroidism in cirrhosis pathogenesis: A retrospective cohort study and multi-omics integration analysis — Ziyang Yang et al. (PLOS Genetics)

Multi-omics analysis reveals metabolic regulation of phosphatidylcholine, triglycerides, phosphatidylethanolamine, and cardiolipin metabolism in mouse liver with MASLD — Hong Liang & Kang Song (PLOS ONE)

Metabolomics and glucose tolerance in pregnancy and postpartum: The PONCH study — Ulrika Andersson-Hall et al. (PLOS ONE)

Microbial Pathogens, Immunity & Infection

Exploring the gut microbiota of Pacific white shrimp suffering pale shrimp disease — Lalitphan Kitsanayanyong et al. (PLOS ONE)

Dominance of Zygosaccharomyces and shifts in bacterial pathways under antimicrobial pressure — Maria Cecilia Rasuk et al. (PLOS ONE)

How transcriptional networks control Verticillium plant infection — Ying-Yu Chen et al. (PLOS Pathogens)

Integrative machine learning and multi-omics framework identifies shared biomarkers for rheumatoid arthritis and ulcerative colitis — Meili Liu et al. (PLOS ONE)

The cervicovaginal microbiome associates with spatially restricted host transcriptional signatures throughout the ectocervical epithelium — Vilde Kaldhusdal et al. (PLOS Pathogens)

Characterization of ORF19.7608 (PPP1), a biofilm-induced gene of Candida albicans — Nmerichukwu C. Iwuchukwu et al. (PLOS ONE)

Differential regulation of the eicosanoid biosynthesis pathway during Enterocytozoon hepatopenaei infection in shrimp — Wananit Wimuttisuk et al. (PLOS ONE)

Animal, Environmental & Soil Microbiomes

Cuts or carcasses? Diet form affects fecal microbial and fiber fractions in Asiatic lions — Mengmeng Sun et al. (PLOS ONE)

From pre-oral secretions to gut digestion: How Lucilia sericata larvae handle Leishmania major — Azam Malekian et al. (PLOS ONE)

Targeted pathogen profiling of ancient feces reveals common enteric infections (725–920 CE) — Drew Capone et al. (PLOS ONE)

Starve or share? Phosphate availability shapes plant–microbe interactions — Maja Schmidt et al. (PLOS Pathogens)

Pathogenicity and transmission of Morganella morganii in honey bees — Yijun Chen & Qiang Huang (PLOS Pathogens)

Mitogenomics of the tropical bont tick reveals vertical and horizontal transmission of Rickettsia africae — Elisha Chatanga et al. (PLOS NTDs)

Differentiation of bacterial communities in the coral Orbicella faveolata across life-cycle stages — Amanda Pérez-Trejo et al. (PLOS ONE)

Insect-derived polymer hydrogel based on fibroin matrix from whole silkworm larvae — Maki Yamazaki et al. (PLOS ONE)

Thermophilic microbiome acclimation improves anaerobic digestion of food waste — Hengxuan Shao et al. (PLOS ONE)

Epidemiology, Public Health & Clinical Microbiology

Assessing piperacillin/tazobactam vs. ceftriaxone + metronidazole for children with perforated appendicitis — Daniel Briatico et al. (PLOS ONE)

Prevalence and antimicrobial resistance of multidrug-resistant Staphylococcus epidermidis in raw milk — Inamullah et al. (PLOS ONE)

Hematological ratios, immune-related adverse events, and mortality in patients receiving immune checkpoint inhibitors — Sophie Lekkerkerker et al. (PLOS ONE)

Geographical and climatic risk factors for COVID-19 in southwest Iran — Koorosh Nikaein et al. (PLOS ONE)

Anthropometric and neurocognitive consequences of Campylobacter, ETEC, and norovirus infections: A systematic review — Patricia B. Pavlinac et al. (PLOS NTDs)

Neuroscience, Immunology & Molecular Networks

Skin melanin is associated with body temperature regulation in humans and mice — Kale S. Bongers et al. (PLOS ONE)

Oxytocin neurons drive melanocortin circuit maturation via vesicle release — Pierre-Yves Barelle et al. (PLOS Biology)

Elucidation and application of the neuroimmune axis between depression and autoimmune diseases — Fu Sun et al. (PLOS ONE)

Quantifying microbial interactions using an iterative generalized Lotka–Volterra approach — Yue Huang et al. (PLOS Computational Biology)