Check out my list of selected latest microbiome studies and see you next week at #MVIF!
Gut microbiome
Gut microbiota-derived hexa-acylated lipopolysaccharides enhance cancer immunotherapy responses – Puspendu Sardar – Nature Microbiology
Priority effects, nutrition and milk glycan-metabolic potential drive Bifidobacterium longum subspecies dynamics in the infant gut microbiome – Nicholas Pucci – PeerJ
Effects of Vegetable and Fruit Juicing on Gut and Oral Microbiome Composition – Maria Luisa Savo Sardaro – Nutrients
Long-term yogurt intake and colorectal cancer incidence subclassified by Bifidobacterium abundance in tumor – Satoko Ugai – Gut Microbes
From sporulation to village differentiation: the shaping of the social microbiome over rural-to-urban lifestyle transition in Indonesia – Clarissa A. Febinia – bioRxiv
Urinary microbiome
The urinary microbiome in association with diabetes and diabetic kidney disease: A systematic review – Tiscar Graells – PlosOne
Vaginal microbiome
Quantitative profiling of the vaginal microbiota improves resolution of the microbiota-immune axis – Eric Armstrong – Microbiome
Migration and standing variation in vaginal and rectal yeast populations in recurrent vulvovaginal candidiasis – Abdul-Rahman Adamu Bukari – bioRxiv
Skin microbiome
A human skin microbiome reference catalog and the skin microbial landscape of plateau adults – Yi Liu – iMetsOmics
Animal microbiome
Exploring the impact of grazing on fecal and soil microbiome dynamics in small ruminants in organic crop-livestock integration systems – Sejin Cheong – PlosOne
Soil warming increases the active antibiotic resistome in the gut of invasive giant African snails – Yiyue Zhang – Microbiome
Animal experiments
A gut-on-a-chip incorporating human faecal samples and peristalsis predicts responses to immune checkpoint inhibitors for melanoma – Mattia Ballerini – Nature Biomedical Engineering
Early-life gut mycobiome core species modulate metabolic health in mice – Mackenzie W. Gutierrez – Nature Communications
Microbiota governs host chenodeoxycholic acid glucuronidation to ameliorate bile acid disorder induced diarrhea – Zishen Lin – Microbiome
The bacterial microbiome modulates the initiation of brain metastasis by impacting the gut-to-brain axis – Matteo Massara – iScience
Bacterial community assembly of specific pathogen-free neonatal mice – Elizabeth A. Kennedy – Microbiome
Antibiotic-associated changes in Akkermansia muciniphila alter its effects on host metabolic health –Yumin Han – Microbiome
Fecal microbiota transplantation modulates jejunal host-microbiota interface in weanling piglets – Shankumar Mooyottu – Microbiome
Bacterial profiles of the oral, vaginal, and rectal mucosa and colostrum of periparturient sows – Virpi Piirainen – PlosOne
Plant microbiome
Comparative analysis of grape berry microbiota uncovers sour rot associates from a Maryland vineyard – Blaise Jumbam – PlosOne
Drinking water microbiome
Building plumbing influences the microdiversity and community assembly of the drinking water microbiome – Huanqi He – Water Research
Bioinformatics
Intraspecies associations from strain-rich metagenome samples – Evan B. Qu – bioRxiv
Techniques
De-biasing microbiome sequencing data: bacterial morphology-based correction of extraction bias and correlates of chimera formation – Luise Rauer – Microbiome
Internships
Outreachy–a 3 month paid internship in open source and open science–applications for the June 2025 cohort are ongoing.
“Twenty professional football players and twelve amateurs were invited to the study groups.”
Microbiome Digest - Bik's Picks 