November 30, 2019

Have a nice weekend! In this Digest, we have a set of reviews about the gut-brain axis, covering associations between microbiota and neurological diseases, as well as a set of reviews about the connection between the microbiome and the immune system. We have also a paper about the microbiome from people living in high-altitude environments, and of course, several papers more. 

 

Human and General Microbiome

Gut microbiota composition in Himalayan and Andean populations and its relationship with diet, lifestyle and adaptation to the high-altitude environment – Andrea Quagliariello – Journal of Anthropological Sciences

Microbiological evidences for gastric cardiac microflora dysbiosis inducing the progression of inflammation – Ruijing Yan – Journal of Gastroenterology and Hepatology

Review: Targeting the gut microbiota for the treatment of irritable bowel syndrome – Charles C. Herndon – The Kaohsiung Journal of Medical Sciences

Review: The Gut Microbiome and Treatment-Resistance in Schizophrenia – Mary V. Seeman – Psychiatric Quarterly

Review: The Role of the Gut Microbiota in the Pathogenesis of Parkinson’s Disease – Dongming Yang – Frontiers in Neurology

Editorial: Interactions of the microbiota with the mucosal immune system – Calum C. Bain – Immunology

Review: Understanding immune-microbiota interactions in the intestine – Philip P. Ahern – Immunology

Review: The interaction of intestinal microbiota and innate lymphoid cells in health and disease throughout life – Stephanie C. Ganal‐Vonarburg – Immunology

Review: Immunological mechanisms underpinning faecal microbiota transplantation for the treatment of inflammatory bowel disease – M. N. Quraishi – Clinical and Experimental Immunology

Review: Population Genetics in the Human Microbiome – Nandita R. Garud – Trends in Genetics

Review: Gut Microbiota And The Use Of Probiotics In Constipation In Children And Adolescents: Systematic Review – Daiane Oliveira Vale San Gomes – Revista Paulista de Pediatria

Review: The gut microbiota modulates both browning of white adipose tissue and the activity of brown adipose tissue – José María Moreno-Navarrete – Reviews in Endocrine and Metabolic Disorders

Decoding Microbiome Research for Clinical Psychiatry – Jane A. Foster – The Canadian Journal of Psychiatry

Lactobacillus iners Is Associated with Vaginal Dysbiosis in Healthy Pregnant Women: A Preliminary Study – Nengneng Zheng – BioMed Research International

Human Endometrial Microbiota at Term of Normal Pregnancies – Claudia Leoni – Genes (MDPI)

Helicobacter pylori Infection Aggravates Dysbiosis of Gut Microbiome in Children With Gastritis – Lu Yang – Frontiers in Cellular and Infection Microbiology

The Effect of Gut Microbiome Composition on Human Immune Responses: An Exploration of Interference by Helminth Infections – Ivonne Martin – Frontiers in Genetics

Metagenome-wide association study of the alterations in the intestinal microbiome composition of ankylosing spondylitis patients and the effect of traditional and herbal treatment – RunYue Huang – Journal of Medical Microbiology 

Gut Microbiota and Cardiometabolic Risk Factors in Hemodialysis Patients: A Pilot Study – Annabel Biruete – Topics in Clinical Nutrition

Habitual animal fat consumption in shaping gut microbiota and microbial metabolites – Yi Wan – Food and Function

 

Animal Microbiome and Animal Experiments

Division of labor in honey bee gut microbiota for plant polysaccharide digestion – Hao Zheng – PNAS

Exploring interactions between xenobiotics, microbiota, and neurotoxicity in zebrafish – Luísa B. Bertotto – NeuroToxicology

The Skin Microbiota of Eleutherodactylus Frogs: Effects of Host Ecology, Phylogeny, and Local Environment – Liza Garcia-Recinos – Frontiers in Microbiology

The intestinal microbiota of lake anchovy varies according to sex, body size, and local habitat in Taihu Lake, China – Min Jiang – Microbiology Open

Microbial associations and spatial proximity predict North American moose (Alces alces) gastrointestinal community composition – Nicholas M. Fountain‐Jones – Journal of Animal Ecology

Immunodeficiency Promotes Adaptive Alterations of Host Gut Microbiome: An Observational Metagenomic Study in Mice – Shuyu Zheng – Frontiers in Microbiology

Integrative analysis of the gut microbiota and metabolome in rats treated with rice straw biochar by 16S rRNA gene sequencing and LC/MS-based metabolomics – Jie Han – Scientific Reports

Wild specimens of sand fly phlebotomine Lutzomyia evansi, vector of leishmaniasis, show high abundance of Methylobacterium and natural carriage of Wolbachia and Cardinium types in the midgut microbiome – Rafael J. Vivero – Scientific Reports

Ochratoxin A induces liver inflammation: involvement of intestinal microbiota – Wence Wang – Microbiome

Toxicity, Pharmacokinetics, and Gut Microbiome of Oral Administration of Sesterterpene MHO7 Derived from a Marine Fungus – Wei Tian – Marine Drugs

 

Bioinformatics

AMON: annotation of metabolite origins via networks to integrate microbiome and metabolome data –  M. Shaffer – BMC Bioinformatics

Managing batch effects in microbiome data – Yiwen Wang – Briefings in Bioinformatics

Review: Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities – Duo Jiang – Frontiers in Genetics

 

Methods

Exploring the chemical space of the human microbiome – Lei Tang – Nature Methods

 

Other

Microbiome Response to Hot Water Treatment and Potential Synergy With Biological Control on Stored Apples – Birgit Wassermann – Frontiers in Microbiology 

Year in Review: Big data and tiny proteins: shining a light on the dark corners of the gut microbiome – Suzanne Devkota – Nature Reviews Gastroenterology & Hepatology 

 

November 26, 2019

Have a nice day! Today in this Digest, we have papers about the microbiome and colorectal carcinoma and autism spectrum disorder, as well as studies about skin microbiota. We have also a set of papers about the effect of diet or probiotics in different animal systems, as well as some studies in insects. 

 

Human and General Microbiome

Resistant starch: impact on the gut microbiome and health – Peter DeMartino – Current Opinion in Biotechnology

Mucosal cancer-associated microbes and anastomotic leakage after resection of colorectal carcinoma – Kosuke Mima – Surgical Oncology

Mycobacterial immunomodulation and viral manipulation of neuronal copper efflux in the setting of sporadic Parkinson’s disease: A multi – hit, outside – in hypothesis of its pathogenesis – George D.Vavougios – Medical Hypotheses

Specificity of gut microbiota in children with autism spectrum disorder in Slovakia and its correlation with astrocytes activity marker and specific behavioural patterns – A.Tomova – Physiology & Behavior

Small intestinal bacterial overgrowth is associated with Diarrhea-predominant irritable bowel syndrome by increasing mainly Prevotella abundance – Kang-Qi Wu – Scandinavian Journal of Gastroenterology 

Probiotics of Diverse Origin and Their Therapeutic Applications: A Review – Monika Yadav – Journal of the American College of Nutrition 

Variation of Gut Mucosal Microbiome With Anti-Saccharomyces cerevisiae Antibody Status in Pediatric Crohn Disease – Shivani Kansal – Journal of Pediatric Gastroenterology and Nutrition

Dataset of the microbiome composition in skin lesions caused by lumpy skin disease virus via 16s rRNA massive parallel sequencing – Sören Hansen – Data in Brief 

Characterization of Skin Microbiome in Tinea Pedis – Xiaoping Liu – Indian Journal of Microbiology

Human Milk Microbiota: Transferring the Antibiotic Resistome to Infants – Lahari Das –  Indian Journal of Microbiology

Vertical selection for nuclear and mitochondrial genomes shapes gut microbiota and modifies risks for complex diseases – Youjie Zhang – Physiological Genomics

The relationship of gastric microbiota and Helicobacter pylori infection in pediatrics population – Ruixue Miao – Helicobacter

The impact of vitamin B12 deficiency on infant gut microbiota – Perran Boran – European Journal of Pediatrics

Novel Therapies for Treatment of Food Allergy – Sultan Albuhairi – Immunology and Allergy Clinics

Structural and Functional Bases of Genitourinary Syndrome of Menopause – A. K. Pichigina – Bulletin of Experimental Biology and Medicine

The role of bacteria and its derived metabolites in chronic pain and depression: Recent findings and research progress – Shan Li – International Journal of Neuropsychopharmacology

Microbial supernatants from Mobiluncus mulieris, a bacteria strongly associated with spontaneous preterm birth, disrupts the cervical epithelial barrier through inflammatory and miRNA mediated mechanisms – Carolynn M. Dude – Anaerobe

Overview of prospects for inflammation pathways in autism spectrum disorders – H.Turbé – L’Encéphale

 

Animal Microbiome and Animal Experiments

The effect of nitrite and sulfide on the antioxidant capacity and microbial composition of the intestines of red swamp crayfish, Procambarus clarkii – Kun Guo – Fish & Shellfish Immunology

Feed supplementation with inulin on broiler performance and meat quality challenged with Clostridium perfringens: Infection and prebiotic impacts – Andréia Guaragni – Microbial Pathogenesis

Strain specific stress-modulating effects of candidate probiotics: a systematic screening in a mouse model of chronic restraint stress – Lotta K. Stenman – Behavioural Brain Research

Effects of the solubility of yeast cell wall preparations on their potential prebiotic properties in dogs – Stephanie de Souza Theodoro – PLoS One

The microbiota of Drosophila suzukii influences the larval development of Drosophila melanogaster – Gabrielle M. Solomon – PeerJ

Host dietary specialization and neutral assembly shape gut bacterial communities of wild dragonflies – Rittik Deb​ – PeerJ

Kestose supplementation exerts bifidogenic effect within fecal microbiota and increases fecal butyrate concentration in dogs – Kaori Ide – Journal of Veterinary Medical Science

Interactions between host and gut microbiota in domestic pigs: a review – Yadnyavalkya Patil – Gut Microbes

Absorptive transport of amino acids by the rat colon – Yuxin Chen – Gastrointestinal and Liver Physiology

Video: Visualization of Candida albicans in the Murine Gastrointestinal Tract Using Fluorescent In Situ Hybridization – Jessica N. Witchley – JoVE

Video: Infecting Mice with Malassezia spp. to Study the Fungus-Host Interaction – Florian Sparber – JoVE

 

Plant and Soil Microbiome

Assisted phytoremediation of chromium spiked soils by Sesbania Sesban in association with Bacillus xiamenensis PM14: A biochemical analysis – Bashir Ud Din – Plant Physiology and Biochemistry

Exploring the genetic potential of a fosmid metagenomic library from an oil-impacted mangrove sediment for metabolism of aromatic compounds – Sanderson Tarciso Pereira de Sousa – Ecotoxicology and Environmental Safety