Human oral microbiome

A novel, simple, frequent oral cleaning method reduces damaging bacteria in the dental microbiota – Chhaliyil et al. – Journal of International Society of Preventive & Community Dentistry

Human gut microbiome

Rapid-Eye-Movement Sleep Behavior Disorder Exhibits Similar but Distinct Gut Dysbiosis Compared to Parkinson’s Disease – Nishiwaki et al. – bioRxiv

The Relationship between Choline Bioavailability from Diet, Intestinal Microbiota Composition, and Its Modulation of Human Diseases – Arias et al. – Nutrients.

Human fecal microbiome

Fecal microRNAs as Innovative Biomarkers of Intestinal Diseases and Effective Players in Host-Microbiome Interactions – Sashar et al. – Cancers

Animal experiments

An ambient temperature collection and stabilization strategy for canine microbiota studies – Lin et al. – Scientific Reports

Animal microbiome

Oral and vaginal microbiota in selected field mice of the genus Apodemus: a wild population study – Matějková et al. – Scientific Reports

Food microbiology

Barrel-Induced Variation in the Microbiome and Mycobiome of Aged Sour Ale and Imperial Porter Beer – Shayevitz et al. – Journal of the American Society of Brewing Chemist

Plant, root and soil microbiome

Influence of invasive earthworms (Amynthas spp.) on Wisconsin forest soil microbial communities and soil chemistry – Price-Christenson et al. – Soil Biology and Biochemestry

Field Exploitation of Multiple Functions of Beneficial Microorganisms for Plant Nutrition and Protection: Real Possibility or Just a Hope? – Kowalska et al. – Frontier in Microbiology

Composition and activity of nitrifier communities in soil are unresponsive to elevated temperature and CO2, but strongly affected by drought – Seneca et al. – The ISME journal

Environmental microbiome

Effects of the inoculum source, electron donor, and immobilization on the microbial community of sulfidogenic bioreactors – Marçal Ferraz et al. – Chemical Engineering Journal

Cryptic fungal diversity revealed in deep-sea sediments associated with whale-fall chemosynthetic ecosystems – Nagano et al. – Mycology

Bioinformatics

A survey on predicting microbe-disease associations: biological data and computational methods – Wen et al. – Briefings in Bioinoformatics

FORENSIC: an Online Platform for Fecal Source Identification – Roguet et al. – mSystems

Techniques

Bacterial mock communities as standards for reproducible cytometric microbiome analysis – Cichocki et al. – Nature Protocols

Pikes peak – Rocky Mountain National Park, Colorado. (August 02, 2020).

Greetings from Colorado.
Today the Microbiome Digest brings you a variety of the latest microbiome related publications including brain, gut, fecal and oral microbiome, plant-microbial interactions and soil biodiversity. Enjoy!.

Covid-19

Rapid Inactivation of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) by Tungsten Trioxide-Based (WO3) Photocatalysis – Ghezzi et al. – bioRxiv

Human Microbiome: brain, gut, fecal and oral

This is the brain on probiotics – Annalisa M. VanHook – Science

Assessment of inter-laboratory variation in the characterization and analysis of the mucosal microbiota in Crohn’s disease and ulcerative colitis – Szamosi et al. -Frontiers in Microbiology

Immunoglobulin recognition of fecal bacteria in stunted and non-stunted children: findings from the Afribiota study – Huus et al. – Microbiome

Metapangenomics of the oral microbiome provides insights into habitat adaptation and cultivar diversity – Utter et al. – bioRxiv

Plant, root and soil microbiome

Evidence for the plant recruitment of beneficial microbes to suppress soil-borne pathogen – Liu et al. – bioRxiv

A Bacterial Effector Protein Hijacks Plant Metabolism to Support Pathogen Nutrition – Xian et al. – Cell Host & Microbe

Development and application of low-cost and eco-sustainable bio- stimulant containing a new plant growth-promoting strain Kosakonia pseudosacchari TL13 – Romano et al. – Frontiers in Microbiology

Environmental microbiology

Blind spots in global soil biodiversity and ecosystem function research – Guerra et al. – Nature Communications

Microbiome Diversity and Community-Level Change Points within Manure-based small Biogas Plants – Theuerl et al. – Microorganisms

Pregnancy and early life
Maternal diet during pregnancy and intestinal markers are associated with early gut microbiota – Selma-Royo et al. – European Journal of Nutrition

Human vaginal microbiome
Changes in the vaginal microbiota across a gradient of urbanization – Vargas-Robles et al. – Scientific Reports

Human gut microbiome
Usefulness of Machine Learning-Based GutMicrobiome Analysis for Identifying Patients with Irritable Bowels Syndrome – Fukui et al. – Journal of Clinical Medicine

Preprint – A pilot study of the effect of deployment on the gut microbiome and traveler’s diarrhea susceptibility – Stamps et al.

Gastric Microbiota in a Low–Helicobacter pylori Prevalence General Population and Their Associations With Gastric Lesions – Ndegwa et al. – Clinical and Translational Gastroenterology

Sexual dimorphism of gut microbiota at different pubertal status – Yuan et al. – Microbial Cell Factories

Animal experiments
Preprint – Intestinal inflammation and altered gut microbiota associated with inflammatory bowel disease renders mice susceptible to Clostridioides difficile colonization and infection – Close et al.

Different effects of constitutive and induced microbiota modulation on microglia in a mouse model of Alzheimer’s disease – Mezo et al. – Acta Neuropathologica Communications

Effects of Vitamin B2 Supplementation in Broilers Microbiota and Metabolome – Biagi et al. – Microorganisms

Animal microbiome
Respiratory microbiota of humpback whales may be reduced in diversity and richness the longer they fast – Vendl et al. – Scientific Reports

Modeling host-microbiome interactions for the prediction of meat quality and carcass composition traits in swine – Khanal et al. – Genetics Selection Evolution

Plant, root, and soil microbiome
Water management and phenology influence the root-associated rice field microbiota – Chialva et al. – FEMS Microbiology Ecology

Water and extremophile microbiome
Aerobic microbial life persists in oxic marine sediment as old as 101.5 million years – Morono et al. – Nature Communications