A post with an overgrowth of gut and skin microbiome papers. Talk about dysbiosis!
General microbiome
The ovarian cancer oncobiome – Sagarika Banerjee – Oncotarget
A metagenomic approach to decipher the indigenous microbial communities of arsenic contaminated groundwater of Assam – Saurav Das – Genomics Data
Applying the design-build-test paradigm in microbiome engineering – Hoang Long Pham – Current Opinion in Biotechnology
Microbiota and their affiliation with physiochemical characteristics of different subsurface petroleum reservoirs – Xiao-Xiao Li – International Biodeterioration & Biodegradation
Sampling, sequencing and the SAD – Sharon Bewick – Ecological Complexity
Pregnancy and early life
The Maternal Diet, Gut Bacteria, and Bacterial Metabolites during Pregnancy Influence Offspring Asthma – Lawrence E. K. Gray – Frontiers in Immunology
Deficiency Leads to Dysbiosis and Bacterial Translocation in the Newborn Intestine – Jason Fawley – Journal of Surgical Research
Human respiratory microbiome
The microbiome of the lung and its extracellular vesicles in nonsmokers, healthy smokers and COPD patients – Hyun Jung Kim – Experimental & Molecular Medicine
Human skin microbiome
The Molecular Revolution in Cutaneous Biology: Investigating the Skin Microbiome – Heidi H. Kong – Journal of Investigative Dermatology
Microbiome controls mast cell differentiation in the skin – Z. Wang – Journal of Investigative Dermatology
Inflammatory gene expression in keratinocytes is regulated by HDAC8 and HDAC9 and is modulated by metabolites from the microbiome – J. Sanford – Journal of Investigative Dermatology
Ultraviolet radiation alters the skin microbiome composition – H. Ahmed – Journal of Investigative Dermatology
Isolation and Identification of the follicular microbiome: Implications for acne research – Amanda Nelson – Journal of Investigative Dermatology
Role of the cutaneous microbiome in the pathogenesis of psoriasis – D. Yan – Journal of Investigative Dermatology
Skin microbiome and psoriasis: Staphylococcus induces robust biofilm formation by Aspergillus – Pranab Mukherjee – Journal of Investigative Dermatology
Microbiome-free fatty acid cross-talk in the human pilosebaceous gland – S. Singh – Journal of Investigative Dermatology
Changes of lesional and non-lesional skin microbiome in the treatment course of atopic dermatitis – J. Na – Journal of Investigative Dermatology
Human gut microbiome
Clinical, functional, behavioural and epigenomic biomarkers of obesity – Claudio L. Lafortuna – Frontiers in Bioscience
‘Collinsella phocaeensis’ sp. nov., ‘Clostridium merdae’ sp. nov., ‘Sutterella massiliensis’ sp. nov., ‘Sutturella timonensis’ sp. nov., ‘Enorma phocaeensis’ sp. nov., ‘Mailhella massiliensis’ gen. nov., sp. nov., ‘Mordavella massiliensis’ gen. nov., sp. nov. and ‘Massiliprevotella massiliensis’ gen. nov., sp. nov., 9 new species isolated from fresh stool samples of healthy French patients – S. Ndongo – New Microbes and New Infections
Editorial: Understanding Crohn’s Disease: Immunity, Genes and Microbes – Amelia Sarmento – Frontiers in Immunology
Human Derived Gut Microbiota Modulates Colonic Secretion in Mice by Regulating 5-HT3 Receptor Expression via Acetate Production – Yogesh Bhattarai – American Journal of Physiology: Gastrointestinal and Liver Physiology
Gastroparesis and lipid metabolism-associated dysbiosis in Wistar Kyoto rats – Julie E Dalziel – American Journal of Physiology: Gastrointestinal and Liver Physiology
How do they stick together? Bacterial adhesins implicated in the binding of bacteria to the human gastrointestinal mucins – Bélinda Ringot-Destrez – Biochemical Society Transactions
Relationships between gut microbiota, plasma metabolites, and metabolic syndrome traits in the METSIM cohort – Elin Org – BioMed Central Genome Biology
Gut microbiota plays a role in the development of alopecia areata – Lekha Nair – Journal of Investigative Dermatology
Dysbiosis of gut microbiota by ampicillin exacerbates vitiligo – S. Akhtar – Journal of Investigative Dermatology
More frequent hemodialysis does not effectively clear protein-bound azotemic solutes derived from gut microbiome metabolism – Andrew Davenport – Kidney International
Gut microbiota and Hepatitis B virus-Induced Chronic Liver Disease: implications for faecal microbiota transplantation therapy – Yongbo Kang – Journal of Hospital Infection
The effect of probiotics as a treatment for constipation in elderly people: a systematic review – Maria Isabel Martínez-Martínez – Archives of Gerontology and Geriatrics
Colonic microbiota encroachment correlates with dysglycemia in humans – Benoit Chassaing – Cellular and Molecular Gastroenterology and Hepatology
Animal microbiome
Liver microbiome of Peromyscus leucopus, a key reservoir host species for emerging infectious diseases in North America – Adrien André – Infection, Genetics and Evolution
Plant, root, and soil microbiome
Conversion of rainforest into agroforestry and monoculture plantation in China: Consequences for soil phosphorus forms and microbial community – Jinchuang Wang – Science of the Total Environment
Tuber indicum shapes the microbial communities of ectomycorhizosphere soil and ectomycorrhizae of an indigenous tree (Pinus armandii) – Qiang Li – PLoS ONE
Draft Genome Sequence of Chryseobacterium sp. JV274 Isolated from Maize Rhizosphere – Jordan Vacheron – Genome Anouncements
Wars between microbes on roots and fruits – Ben Lugtenberg – F1000Research
Food microbiology
Metagenomic assessment of the microbial diversity in ground pork products from markets in the North Central Region of South Korea – Ok-Kyung Koo – Journal
Journal of Environmental Science and Health
Growth of selected probiotic bacterial strains with fructans from Nendran banana and garlic – Ravichandran Shalini – LWT: Food Science and Technology
Techniques
Suitability of various DNA extraction methods for a traditional Chinese paocai system –
Nan Zhao – Bioengineered
Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies – William W. Greenwald – BioMed Central Genomics
Microbes in the news
IISc makes two potent molecules to fight TB – Ravindranath Prasad – The Hindu
Essential California: Inside UC Irvine hospital’s bacteria outbreak among infants – Benjamin Oreskes and Shelby Grad – Los Angeles Times
Microbiome Digest - Bik's Picks 