Today’s digest features human gut microbiome studies on dietary fiber and fasting glucose, ocean microbiome, pangenome approaches, and more.
See you at #MVIF!
Oral microbiome
Saliva sampling method influences oral microbiome composition and taxa distribution associated with oral diseases – Cristian Roca – PlosOne
Gut microbiome
Changes in the intestinal microbiota of individuals with non-alcoholic fatty liver disease based on sequencing: An updated systematic review and meta-analysis – Wenpin Cai – PlosOne
Gut microbiota differences in stunted and normal-lenght children aged 36–45 months in East Nusa Tenggara, Indonesia – Ingrid S. Surono – PlosOne
Integrating research on bacterial pathogens and commensals to fight infections—an ecological perspective – Lisa Maier – The Lancet Microbe
Recommendations for the Use of Dietary Fiber to Improve Blood Pressure Control – Hamdi A. Jama – Hypertension
Review: Prebiotic selection influencing inflammatory bowel disease treatment outcomes: a review of the preclinical and clinical evidence – Amin Ariaee – eGastroenterology
Overcoming donor variability and risks associated with fecal microbiota transplants through bacteriophage-mediated treatments – Torben Soelbeck Rasmussen – bioRxiv
Continuous glucose monitoring and intrapersonal variability in fasting glucose – Smadar Shilo – Nature Medicine
Animal microbiome
Intestinal microbiome profiles in broiler chickens raised without antibiotics exhibit altered microbiome dynamics relative to conventionally raised chickens – Seyed Hossien Kairmi – PlosOne
Microbial signatures and enterotype clusters in fattening pigs: implications for nitrogen utilization efficiency – Naomi Sarpong – Frontiers in Microbiology
A genome-centric view of the role of the Acropora kenti microbiome in coral health and resilience – Lauren F. Messer – Nature Communications
Varied microbial community assembly and specialization patterns driven by early life microbiome perturbation and modulation in young ruminants – Zhe Pan – ISME Communications
Ocean microbiome
Decoding populations in the ocean microbiome – Ramiro Logares – Microbiome
Bioinformatics
High-resolution Profiling of Bacterial and Fungal Communities using Pangenome-Informed Taxon-Specific Long-Read Amplicons – Luzia Stalder – bioRxiv
CELEBRIMBOR: Pangenomes from metagenomes – Joel Hellewell – bioRxiv
Microbiome Digest - Bik's Picks 