Microbes lighting up the clouds, bacterial degradation of human bone, and probiotics after colonoscopy.
Microbiome of death
An Investigation Into the Relationship Between Funerary Treatment and Bacterial Bioerosion in European Archaeological Human Bone – T. J. Booth – Archaeometry
Human oral microbiome
Cytokine expression in peri-implant crevicular fluid in relation to bacterial presence
– Stefan Renvert – Journal of Clinical Periodontology
High-quality draft genome sequences of five anaerobic oral bacteria and description of
Peptoanaerobacter stomatis gen. nov., sp. nov., a new member of the family Peptostreptococcaceae – Maria V. Sizova – Standards in Genomic Sciences
The metabonomic studies of tongue coating in H.pylori positive chronic gastritis patients – Xuan Liu – Evidence Based Complimentary and Alternative Medicine
Human gut microbiome
Randomized controlled trial of probiotics after colonoscopy – Basil D’Souza – ANZ Journal of Surgery
Animal models of microbiome
Chlorinated Water Modulates the Development of Colorectal Tumors with Chromosomal Instability and Gut Microbiota in Apc-Deficient Mice – Tatsunari Sasada – PLOS ONE
A novel “humanized mouse” model for autoimmune hepatitis and the association of gut microbiota with liver inflammation – Muhammed Yuksel – Hepatology
Modulation of gut microbiota in rats fed high-fat diets by processing whole-grain barley to barley malt – Yadong Zhong – Molecular Nutrition & Food Research
Effects of microcystin-LR on gut microflora in different gut regions of mice – Jing Chen – The Journal of Toxicological Sciences
Animal microbiome
Review: Advancements in Bovine Rumen Microbial Ecology: A Review – Nidhi R. Parmar – Int.J.Curr.Microbiol.App.Sci
Bacteria detected in the honeybee parasitic mite Varroa destructor collected from beehive winter debris – Jan Hubert – Journal of Applied Microbiology
A comparative study on microbiota from the intestine of Prussian carp (Carassius gibelio) and their aquatic environmental compartments, using different molecular methods – Elena N. Kashinskaya – Journal of Applied Microbiology
Response of the bacterial community associated with a cosmopolitan marine diatom to crude oil shows a preference for the biodegradation of aromatic hydrocarbons – Sara Mishamandan – Environmental Microbiology
Host-Specific and pH-Dependent Microbiomes of Copepods in an Extensive Rearing System – Alf Skovgaard – PLOS ONE
Microenvironment and Phylogenetic Diversity of Prochloron Inhabiting the Surface of Crustose Didemnid Ascidians – Daniel A. Nielsen – Environmental Microbiology
Plant, root, and soil microbiome
Editorial: Environmental phytoremediation: plants and microorganisms at work – Antonella Furini – Frontiers in Plant Science
Diversity and distribution of endophytic bacterial community in the Noni (Morinda citrifolia L.) plant – Yang Liu – African Journal of Microbiology Research
Aboveground-belowground biodiversity linkages differ in early and late successional temperate forests – Hui Li – Scientific Reports
Effects of Conservation Agriculture and Fertilization on Soil Microbial Diversity and Activity – Johan Habig – Environments
Resilience and receptivity worked in tandem to sustain a geothermal mat community amidst erratic environmental conditions – Wriddhiman Ghosh – Scientific Reports
Determinants of bacterial communities in Canadian agroforestry systems – Samiran Banerjee – Environmental Microbiology
Indigenous arsenic(V)-reducing microbial communities in redox-fluctuating near-surface sediments of the Mekong Delta – S. C. Ying – Geobiology
Impact of soil salinity on arbuscular mycorrhizal fungi biodiversity and microflora biomass associated with Tamarix articulataVahll rhizosphere in arid and semi-arid Algerian areas – Karima Bencherif – Science of The Total Environment
Water microbiome
Natural aerosols explain seasonal and spatial patterns of Southern Ocean cloud albedo – Daniel T. McCoy – Science Advances
Diversity of bacterioplankton in the surface seawaters of Drake Passage near the Chinese Antarctic station – Mengxin Xing – FEMS Microbiology Letters
Seasonality in molecular and cytometric diversity of marine bacterioplankton: the reshuffling of bacterial taxa by vertical mixing – Francisca C. García – Environmental Microbiology
Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool – Weipeng Zhang – Environmental Microbiology
Waste treatment microbiology
Changes in bacterial and archaeal communities in anaerobic digesters treating different organic wastes – Young Mo Kim – Chemosphere
The role of starvation in biomass harvesting and lipid accumulation: Co-culture of microalgae–bacteria in synthetic wastewater – Yanjia Xu – Environmental Progress & Sustainable Energy
A high-throughput sequencing study of bacterial communities in an autohydrogenotrophic denitrifying bio-ceramsite reactor– Dan Chen – Process Biochemistry
Food microbiology
Packaging gas selects lactic acid bacterial communities on raw pork – Timo T Nieminen – Journal of Applied Microbiology
Metabolic networks
Enteric Pathogens Exploit the Microbiota-generated Nutritional Environment of the Gut – Alline R. Pacheco – Microbiology Spectrum
Linking metabolite production to taxonomic identity in environmental samples by (MA)LDI-FISH – Martin Kaltenpoth – The ISME Journal
Techniques
Phospholipid fatty acid profiling of microbial communities – a review of interpretations and recent applications – C Willers – Journal of Applied Microbiology
Microbes in the news
Tiny Ocean Microbes are Brightening Up the Sky – Maddie Stone – Gizmodo
Baby’s Microbiome: Why Birth to Age Three Is So Critical For Your Child’s Health – Toni Harman – Huffington Post
These caffeine-addicted beetles are using bacteria to ruin all of our coffee – Elahe Izadi – Washington Post
Unearthing Cornerstones in Root Microbiomes. Defining core members of a microbial community for normal plant growth – Joint Genome Institute
You Need Way More Nutrients for Good Gut Health – Rachael Schultz – Shape
Targeting gut microbiome boosted metformin tolerance – Jennie Smith – Clinical Endocrinology News
Scientist develops model for robots with bacteria-controlled brains – Phys.org
Bik’s Picks
Watch what happens when a spinning basketball gets thrown off a dam – Chris Matyszczyk – CNET
Restaurant Food May Be Unhealthier Than Fast Food – Mandy Oaklander – Time
U.S. Adults Are Not Eating Enough Vegetables, Fruit – Says New Study – Matthew Rideout – The Times Gazette
Sea turtle released off Florida Keys tracked by satellite – Daily Commercial
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Microbiome Digest - Bik's Picks 