January 11, 2019

General Microbiome

A great-ape view of the gut microbiome.Nishida AH. Nature Reviews Genetics

Relative reduction of biological and phylogenetic diversity of the oral microbiota of diabetes and pre-diabetes patients. Saeb ATM. Microbial Pathogenesis

Dietary modulation of the microbiome as therapy.Bernard NJ. Nature Reviews Rheumatology

Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems.Pacheco AR. Nature Communications

Low-moisture food matrices as probiotic carriers. Marcial-Coba MS . FEMS Microbiology Letters

REVIEW: Cross-Domain and Viral Interactions in the Microbiome.Rowan-Nash AD. Microbiology and Molecular Biology Reviews

The respiratory microbiome and susceptibility to influenza virus infection. Lee KH. PLoS One

Food Microbiome

Metagenomic profiles of different types of Italian high-moisture Mozzarella cheese.Marino M. Food Microbiology

Gut Microbiome

Enhancement of the gut barrier integrity by a microbial metabolite through the Nrf2 pathway.Singh R. Nature Communications

Pilot study of probiotic/colostrum supplementation on gut function in children with autism and gastrointestinal symptoms.Sanctuary MR. PLoS One

Nonsteroidal Anti-inflammatory Drugs Alter the Microbiota and Exacerbate <i>Clostridium difficile</i> Colitis while Dysregulating the Inflammatory Response.Maseda D. mBio

Techniques/Resources

OTUX: V-region specific OTU database for improved 16S rRNA OTU picking and efficient cross-study taxonomic comparison of microbiomes. Yadav D. DNA Research

Streamlining standard bacteriophage methods for higher throughput.Kauffman KM. MethodsX

Indirect DNA extraction method suitable for acidic soil with high clay content. Högfors-Rönnholm E. MethodsX

DATABASE: The 26th annual Nucleic Acids Research database issue and Molecular Biology Database Collection.Rigden DJ. Nucleic Acid Research

Animal Experiments and Microbiome

Effect of the Nursing Mother on the Gut Microbiome of the Offspring During Early Mouse Development.Treichel NS. Microbial Ecology

Delayed differentiation of vaginal and uterine microbiomes in dairy cows developing postpartum endometritis.Miranda-CasoLuengo R. PLoS One.

Seabird and pinniped shape soil bacterial communities of their settlements in Cape Shirreff, Antarctica.Ramírez-Fernández L. PLoS One

Use of 16S rRNA gene sequencing for prediction of new opportunistic pathogens in chicken ileal and cecal microbiota.Kollarcikova M. Poultry Science

Whole rumen metagenome sequencing allows classifying and predicting feed efficiency and intake levels in cattle.Delgado B. Scientific  Reports

 

Marine and Inland Waters

Diversity and Composition of Pelagic Prokaryotic and Protist Communities in a Thin Arctic Sea-Ice Regime.de Sousa AGG. Microbial Ecology

Stratification, nitrogen fixation, and cyanobacterial bloom stage regulate the planktonic food web structure.Loick-Wilde N. Global Change Biology

Analysis of viral and bacterial communities in groundwater associated with contaminated land.Costeira R. Science of the Total Environment

Plant, Soil, and Air Microbiome

The known and the unknown in soil microbial ecology. Baldrian P. FEMS Microbiology Ecology.

Genomic analysis of bacteria in the Acute Oak Decline pathobiome.Doonan J. Microbial Genomics.

Glutathione S-Transferase Enzymes in Plant-Pathogen Interactions.Gullner G. Frontiers in Plant Science

A comparative metagenomic and spectroscopic analysis of soils from an international point of entry between the US and Mexico.  Cota-Ruiz K. Environmental International

Metagenome tracking biogeographic agroecology: Phytobiota of tomatoes from Virginia, Maryland, North Carolina and California. Ottesen A. Food Microbiology

Temporal Dynamics of Bacterial Communities in Soil and Leachate Water After Swine Manure Application.Rieke EL. Frontiers of Microbiology

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