July 31, 2026

Diet, Gut Health & Microbiome

Dietitian-led intervention to manage constipation in Parkinson’s disease: Study protocol for a parallel-group randomized controlled trial (NUTRI-GUT-PD) – Juliana Heitich Brendler – PLOS ONE

Efficacy and safety of prebiotics, probiotics, and synbiotics on hemoglobin and anemia in the pediatric population: A systematic review and meta-analysis – Gladys Estheysi Elías Solís – PLOS ONE

Pharmacokinetic model selection for infliximab based on inflammatory bowel disease phenotype and severity: Toward model-informed precision dosing – Ana Homšek Ilić – PLOS ONE

Pathogens, Infection & Host–Microbe Interactions

Neotropical bats as sentinels for emerging zoonoses in Central America: A case study identifying Trypanosoma cruzi in bats from Belize using metagenomic next-generation sequencing – Elissa G. Torgerson – PLOS Neglected Tropical Diseases

Viral replication dynamics: Coinfection and superinfection of Vero cells with Zika virus and West Nile virus or Zika virus and Mayaro virus – Larissa Krokovsky – PLOS ONE

Phenotypic and molecular characterization of Salmonella enterica isolated from retail beef in Peshawar, Pakistan – Muhammad Jawad Ullah – PLOS ONE

Longitudinal study of a rodent invasion reveals shifts in host pathogen interactions – Andrew McManus – PLOS ONE

Noncanonical bactericidal activity of teleost type I interferon is conferred by a membrane-targeting C-terminal peptide – Han Zhang – PLOS Pathogens

A single DNA methylation site regulates cell fate during Clostridioides difficile sporulation – Pola Kuhn – PLOS Genetics

Microbial Genomics & Systems Biology

A systems biology approach to find representative genes in Acute Myeloid Leukemia– Behnam Aghajan – PLOS ONE

Aquatic & Animal Microbiology

Influence of salinity on growth, nutrient utilization, and gene expression of giant freshwater prawn (Macrobrachium rosenbergii) – Farhana Ahamed Shanila – PLOS ONE

Metabolism, Inflammation & Human Health

Integrated computational analysis identifies FABP4, PTGS2, and HPGD as key molecular targets linking PET microplastic exposure to metabolic dysfunction-associated steatotic liver disease – Yi Zhang – PLOS ONE

Exploring the mechanism of Shuangyu Granule in regulating immune-inflammatory responses in influenza through UPLC-Orbitrap-MS/MS, GC-MS, and network target analysis – Ling Sun – PLOS ONE

Cardiometabolic risk pathways in adults with disabilities: A structural equation model of diet quality and functional ability – Radwan Qasrawi – PLOS ONE

Neuroscience & Neurodegeneration

Research advances in key genes and regulatory mechanisms of posttranslational modifications in Parkinson’s disease – Bangzhi Wang – PLOS ONE

Clinical & Healthcare Research

HF-OCAQ: Oral comfort assessment in heart failure patients – Mei Lu – PLOS ONE

Mental Health

Spirituality as a coping resource: Towards integration into mental health framework – Sajama Nepali – PLOS Mental Health

January 16, 2020

Good morning/night everyone!

What I love about writing for MD is the huge diversity of topics we’re meeting along the process of making the daily digest. Even though I’m mostly working on plant and root microbiome, it’s amazing to see how diverse is the world of microbiome and how much more there is to accomplish. Check out today’s digest- and don’t forget the News section as well! it is highly interesting!

General Microbiology

Detection of phylogenetic core groups in diverse microbial ecosystems, Marcos Parras Molto, bioRxiv

Isolation of an archaeon at the prokaryote–eukaryote interface, Hiroyuki Imachi, Nature

Ferrosomes are iron storage organelles formed by broadly conserved gene clusters in bacteria and archaea, Carly R. Grant , bioRxiv

Human microbiome

Distribution of microbial communities and core microbiome in successive wound grades of diabetic foot ulcer individuals, Apoorva Jnana, AEM

Animal microbiome

Parasites modulate the gut-microbiome in insects: A proof-of-concept study, Brian Fredensborg, PlosONE

The effect of diet on the gastrointestinal microbiome of juvenile rehabilitating green turtles (Chelonia mydas), Jennifer Bloodgood ,PlosONE

Rotten-skin disease significantly changed giant spiny frog(Paa spinosa) gut microbiota, Tuoyu He, bioRxiv

Bacterial Biogeography of the Colon in Dogs With Chronic Inflammatory Enteropathy, Paula Giaretta, Veterniary Pathology

Plant and environmental microbiome

Biostimulants applied to maize seeds modulate the enzymatic activity and metaproteome of the rhizosphere, Monica Mattarozzi, Applied Soil Ecology

Biological inhibition of soil nitrification by forest tree species affects Nitrobacter populations, Amandine Laffite, Environmental Microbiology

Extremophile microalgae: An overview, Veronica Malavasi , Journal of Phycology

Methods in microbiome

**Taxonomic classification method for metagenomics based on
core protein families with Core-Kaiju
, Anna Tovo, bioRxiv

**Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance, Xianding Deng , Nature Microbiology

Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling, Ching Jian, PlosONE

The effect of storage conditions on microbial communities in stool, Kristien Nel Van Zyl, PlosONE

Beyond mass spectrometry, the next step in proteomics, Winston and Gregory Timp, Science Advances

Microbiome in the news

Illumina Announces New Sequencing System, Partnership with Roche and Software Suite to Accelerate Adoption of Genomics

Integrating microbiomes into clinical trials – the importance of time

Bayer and Azitra partnership looks to develop skin microbiome products for eczema

**Please read! our mental health is the MOST important thing in our life! Researchers facing ‘shocking’ levels of stress, survey reveals