Good morning/night everyone!
What I love about writing for MD is the huge diversity of topics we’re meeting along the process of making the daily digest. Even though I’m mostly working on plant and root microbiome, it’s amazing to see how diverse is the world of microbiome and how much more there is to accomplish. Check out today’s digest- and don’t forget the News section as well! it is highly interesting!
General Microbiology
Detection of phylogenetic core groups in diverse microbial ecosystems, Marcos Parras Molto, bioRxiv
Isolation of an archaeon at the prokaryote–eukaryote interface, Hiroyuki Imachi, Nature
Ferrosomes are iron storage organelles formed by broadly conserved gene clusters in bacteria and archaea, Carly R. Grant , bioRxiv
Human microbiome
Distribution of microbial communities and core microbiome in successive wound grades of diabetic foot ulcer individuals, Apoorva Jnana, AEM
Animal microbiome
Parasites modulate the gut-microbiome in insects: A proof-of-concept study, Brian Fredensborg, PlosONE
The effect of diet on the gastrointestinal microbiome of juvenile rehabilitating green turtles (Chelonia mydas), Jennifer Bloodgood ,PlosONE
Rotten-skin disease significantly changed giant spiny frog(Paa spinosa) gut microbiota, Tuoyu He, bioRxiv
Bacterial Biogeography of the Colon in Dogs With Chronic Inflammatory Enteropathy, Paula Giaretta, Veterniary Pathology
Plant and environmental microbiome
Biostimulants applied to maize seeds modulate the enzymatic activity and metaproteome of the rhizosphere, Monica Mattarozzi, Applied Soil Ecology
Biological inhibition of soil nitrification by forest tree species affects Nitrobacter populations, Amandine Laffite, Environmental Microbiology
Extremophile microalgae: An overview, Veronica Malavasi , Journal of Phycology
Methods in microbiome
**Taxonomic classification method for metagenomics based on
core protein families with Core-Kaiju, Anna Tovo, bioRxiv
**Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance, Xianding Deng , Nature Microbiology
Quantitative PCR provides a simple and accessible method for quantitative microbiota profiling, Ching Jian, PlosONE
The effect of storage conditions on microbial communities in stool, Kristien Nel Van Zyl, PlosONE
Beyond mass spectrometry, the next step in proteomics, Winston and Gregory Timp, Science Advances
Microbiome in the news
Integrating microbiomes into clinical trials – the importance of time
Bayer and Azitra partnership looks to develop skin microbiome products for eczema
**Please read! our mental health is the MOST important thing in our life! Researchers facing ‘shocking’ levels of stress, survey reveals
Microbiome Digest - Bik's Picks 