More Microbiology and Science, June 4, 2014

Dengue, arthritis, arsenic, two retractions, frogs singing in the gutters, and deadly sharks (but not as you know them).

Infection, sepsis, and host response

Screen Shot 2014-06-05 at 1.08.42 AMBacteria in the Adventitia of Cardiovascular Disease Patients with and without Rheumatoid Arthritis – Samuel A. Curran – PLOS ONE

“The aortic adventitia of CVD patients contains a wide range of bacterial species, and the bacterial flora is significantly less diverse in RA+CVD than CVD patients. M. oryzae may stimulate an proinflammatory response that may aggravate and perpetuate the pathological processes underlying atherosclerosis in RA patients.”

Dengue Screen Shot 2014-06-05 at 1.06.24 AM

A tetravalent alphavirus-vector based dengue vaccine provides effective immunity in an early life mouse model – Syed Muaz Khalil – Vaccine

“We report here that a single immunization with a tetravalent VRP vaccine induced NAb and T-cell responses to each serotype at a level equivalent to the monovalent vaccine components, suggesting that this vaccine modality can overcome serotype interference. “

Arsenic metabolism

Screen Shot 2014-06-05 at 1.09.38 AMSpecies- and tissue-specific bioaccumulation of arsenicals in various aquatic organisms from a highly industrialized area in the Pohang City, Korea – Seongjin Hong – Environmental Pollution

“Contamination of water and sediment with arsenic (As) in a highly industrialized area of Pohang City, Korea was investigated, with emphasis on in situ bioaccumulation of arsenicals by various aquatic organisms.”

Publishing and misconduct Screen Shot 2014-06-05 at 1.03.01 AM

Japanese scientist to retract stem cell papers – Phys.org

“Haruko Obokata, 30, would withdraw two papers at the centre of the controversy, according to a spokeswoman for Riken, the respected  that sponsored the study, marking a steep fall from grace for the young researcher.”

Dr. Bik’s Picks

SharkShark meat worse than its bite – Tony Camie – IOL Scitech

“Never mind their fearsome jaws. People are now more likely to be killed by eating shark meat rather than the other way round.”

frogUrban frogs use drains as mating megaphones – Katia Moskvitch – Nature

“Gathering in the gutter may provide a better way to seduce females.”

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General microbiology and science digest, June 3, 2014

Dengue, immunology, arsenic, and The Picks.


Immunology

Review: Ontogeny of early life immunity – David J. Dowling, Ofer Levy – Trends in Immunology

“Here, we review novel mechanistic insights into early life immunity, with an emphasis on emerging models of human immune ontogeny”

Dengue

Time-varying, serotype-specific force of infection of dengue virus – Robert C. Reiner, Jr. – PNAS

“Using a bespoke method for a 12-y longitudinal dataset of serotype-specific dengue virus (DENV) infections, we estimated time-varying, serotype-specific FoIs for all four DENV serotypes. “

Correspondence: A “microRNA-like” small RNA expressed by Dengue virus? – Rebecca L. Skalsky – PNAS

Reply to Skalsky et al.: A microRNA-like small RNA from Dengue virus – Mazhar Hussain and Sassan Asgari – PNAS


More Microbiology

Review: Tropheryma whipplei and Whipple’s disease – Florence Fenollar, Jean-Christophe Lagier, Didier Raoult – Journal of Infection

“T. whipplei seems to be an opportunistic bacterium that causes chronic infections in susceptible patients with as yet unknown predisposing factors.”

Genesis and pathogenesis of the 1918 pandemic H1N1 influenza A virus
Michael Worobey – PNAS

“We infer that the virus arose via reassortment between a preexisting human H1 IAV lineage and an avian virus”

Shotgun glycomics of pig lung identifies natural endogenous receptors for influenza viruses – Lauren Byrd-Leotis – PNAS

“Studies using novel “shotgun glycan microarray” technology identify, for the first time to our knowledge, the endogenous receptors for influenza viruses from a natural host, the pig.”

Counties Deploying Bacteria-Sniffing Dogs To Find Failing Septic Systems – Bellamy Pailthorp – PKLU.org

“Molly, a border collie trained by Environmental Canine Services, can sniff out human fecal coliform bacteria in water samples.”

Arsenic metabolism

Arsenic in the Multi-aquifer System of the Mekong Delta, Vietnam: Analysis of Large-Scale Spatial Trends and Controlling Factors – Laura E. Erban – Environmental Science & Technology

“We relate strong trends in the distribution of contamination among well samples to explanatory variables derived from 3D ancillary physicochemical data sets using logistic regression models.”

Monitoring Arsenic Contamination in Agricultural Soils with Reflectance Spectroscopy of Rice Plants – Tiezhu Shi – Environmental Science & Technology

“The prediction of soil As contents was achieved by partial least-squares regression (PLSR) using laboratory and field spectra of rice plants, as well as linear regression employing normalized difference spectral index (NDSI) calculated from fild spectra. “

Marine Mammals

Fossil record shows whales evolved from land to sea – Steve Luckstead – UnionBulletin

“Other mammals such as seals, sea lions and walrusess spend a good part of their lives in the ocean, but they are clearly tetrapods (four-legged). But whales don’t have any leg-like appendages. So what gives?”


Science and Art

Sculpting the apples of science – Helen Fields – PNAS

“Rath’s work is based on a visit to the US Department of Agriculture’s Plant Genetic Resources Unit (PGRU) in Geneva, New York. The PGRU grows thousands of apple varieties that might otherwise disappear from orchards.”

Dr. Bik’s Picks

Evidence of bird dropping masquerading by a spider to avoid predators – Min-Hui Liu – Nature Scientific Reports

” The orb-web spider Cyclosa ginnaga has a silver body and adds a white discoid-shaped silk decoration to its web. The size, shape and colour of C. ginnaga’s body resemble, when viewed by the human eye against its decoration, a bird dropping. “

Why Have Female Hurricanes Killed More People Than Male Ones? – Ed Yong – National Geographic

“Here’s a simple fact with an uncertain explanation: historically, hurricanes with female names have, on average, killed more people than those with male ones.”

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Human microbiome digest – May 28, 2014

Today I will have four separate posts, to see if that would work better. This post is all about the human microbiome, with articles about arthritis, childhood wheezing, and pregnancy.

Human Gut Microbiome

Screen shot 2014-05-28 at 06.03PM, May 28Human Respiratory Microbiome

Screen shot 2014-05-28 at 06.08PM, May 28Pregnancy and Birth

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Infection and host response digest – May 28, 2014

Hi all,

Today I’m just playing with different layouts for my digests, by splitting them up into smaller groups of topics. In this post, you will find dengue, phages, and infection/host response papers.

Dengue

Phages and viruses

Infection and Host ReponseScreen Shot 2014-05-28 at 7.32.41 PM

Staphylococcus aureus

Arsenic metabolism

 

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Digest May 23, 2014

Today’s digest features showering with bacteria instead of soap, bacteria on the Mars rover, phages and bacteria reading through stop-codons, and a meteor shower tonight. What do meteor showers have to do with microbiome papers, you ask? Well, nothing. They are just cool to watch. So put on that fleece, get yourself to a dark place outside, and look North. Or stay inside and read today’s new digest.

General microbiome papers

Human oral microbiome papers

Human gut microbiome papers

Human genital microbiome papers

Pregnancy and birth papers

Metagenomics

Chromosomal organization

Antibiotics and resistance papers

Pathogenicity papers

Phages and viruses

Microbes in space

More Microbes

Bacteria in the news

Dr. Bik’s Picks

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