Lots of abstracts today that were published in the FASEB Journal. Although not clearly marked, these appear to be abstracts from an ASBMB meeting held in March 2015 in Boston, called “The Human Microbiome“. None of these have a link to a PDF.
Course: Frontiers in Host-Microbe Interactions – August 2015
Pregnancy and birth microbiome
The FASEB Journal Abstracts:
- Neonatal Antibiotic Exposure Alters Compositional Gut Microbiota Development During the First 6 Months of Life – Himanshu Kumar
- Vaginal Microbiota, Racial/Ethnic Groups, and Risk of Preterm Birth – Betsy Foxman
- Human Gut Microbes Associated with Infant Weight-for-Length Growth – N. Ollberding
Review: Normal flora and bacterial vaginosis in pregnancy: an overview – Mathys Jacobus Redelinghuys – Critical Reviews in Microbiology
Review: The Infant Gut Microbiome: Evidence for Obesity Risk and Dietary Intervention – Petya T. Koleva – Nutrients
Human skin microbiome
The diversity and host interactions of Propionibacterium acnes bacteriophages on human skin – Jared Liu – The ISME Journal
Human oral microbiome
The Repertoire of Archaea Cultivated from Severe Periodontitis – Hong T. T. Huynh – PLOS ONE
Review: Filifactor alocis – a new emerging periodontal pathogen – A. Wilson Aruni – Microbes and Infection
Human gut microbiome
The FASEB Journal Abstracts:
- Obesity, Bariatric Surgery, and the Gut Microbiome – Zehra Ilhan
- Artificial Sweetener Consumption and Microbiome Profiles in 31 Adults Living in the United States – Cara Frankenfeld
Autism spectrum disorders and intestinal microbiota – Maria De Angelis – Gut Microbes
Review: Impacts of Gut Bacteria on Human Health and Diseases – Yu-Jie Zhang – International Journal of Molecular Sciences
Animal models of microbiome research
The FASEB Journal Abstracts:
- TNF Modulates The Gut Microbiota And Drives Inflammation – Ariangela Kozik
- Resistant Starch Alters Gut Microbiota and Reduces Uremic Retention Solutes in Rats with Adenine-induced Chronic Kidney Disease – D Kieffer
- Conditional Effect of Selenium on the Mammalian Hind Gut Microbiota – David Taussig
- High-calorie diet (HCD) induced elevation in calprotectin and lipocalin-2 correlates with changes in gut bacteria and their metabolites in a porcine model – Sridhar Radhakrishnan
- Perinatal bisphenol-A exposure causes colonic and liver inflammation in rabbit pups and alters gut bacterial and metabolite profiles – Lavanya Reddivari
- Goji berry improves colitis in IL10-/- mice through modulating gut microbiota – Yifei Kang
- Microbiome/Metabolic Syndrome/Diabetes and CVD – Aldons J Lusis
- Enzyme-treated Wheat Bran Alters Gut Microbiota and Liver Metabolome in Mice Fed a High Fat Diet – D Kieffer
Leaky intestine and impaired microbiome in an amyotrophic lateral sclerosis mouse model – Shaoping Wu – Physiological Reports
Metabolomic Modeling To Monitor Host Responsiveness to Gut Microbiota Manipulation in the BTBRT+tf/j Mouse – Matthias S. Klein – Journal of Proteome Research
Animal microbiome
The FASEB Journal Abstract: The Extraordinary Evolution of the Great Ape Microbiome
Howard Ochman
Pigs: How host gender affects the bacterial community in pig feces and its correlation to skatole production – Zhenjin Zhou – Annals of Microbiology
Pigs: Analysis of swine fecal microbiota at various growth stages – Jungman Kim – Archives of Microbiology
Fish / Review: Disinfection of teleost eggs: a review – Evelien De Swaef – Reviews in Aquaculture
Ticks: Concordance of bacterial communities of two tick species and blood of their shared rodent host – Evelyn C. Rynkiewicz – Molecular Ecology
Soil microbiome
Over 150 Years of Long-Term Fertilization Alters Spatial Scaling of Microbial Biodiversity – Yuting Liang – mBio
Analysis of Bacterial and Archaeal Communities along a High-Molecular-Weight Polyacrylamide Transportation Pipeline System in an Oil Field – Cai-Yun Li – International Journal of Molecular Sciences
Effects of Functionalized and Raw Multi-Walled Carbon Nanotubes on Soil Bacterial Community Composition – Dorsaf Kerfahi – PLOS ONE
Review: Effective role of indigenous microorganisms for sustainable environment – Baduru Lakshman Kumar and D. V. R. Sai Gopal – 3 Biotech
Water microbiome
Size-fractionated diversity of eukaryotic microbial communities in the Eastern Tropical North Pacific oxygen minimum zone – M.T. Duret – FEMS Microbial Ecology
Seawater mesocosm experiments in the Arctic uncover differential transfer of marine bacteria to aerosols – Camilla Fahlgren – Environmental Microbiology Reports
Book: Microbiology of the Everglades Ecosystem – CRC Press
Extremophile microbiome
Physiochemical control of bacterial and protist community composition and diversity in Antarctic sea ice – Anders Torstensson – Environmental Microbiology
Whole-Genome Shotgun Sequence of the Keratinolytic Bacterium Lysobacter sp. A03, Isolated from the Antarctic Environment – Jamile Queiroz Pereira – Genome Announcements
Food microbiome
Microbial Ecology of Watery Kimchi – Kyu Hang Kyung – Journal of Food Science
Bioreactor and biofilter microbiome
Characterization of the microbial community structure and nitrosamine-reducing isolates in drinking water biofilters – Wanfeng Wang – Science of the Total Environment
Metagenomics, Metabolomics, and Transcriptomics
The FASEB Journal Abstracts:
- Diet, Microbiota, and Microbial Metabolites in Rural Africans and African Americans –
Stephen O’Keefe - Functional Association Profiling of Metabolic Landscape and Microbiome in Chronic Pressure Ulcer Wounds – Mary Cloud Ammons – The FASEB Journal
- Networks of Exchanging Antibiotic Resistomes in Human and Environmental Microbiota – Gautam Dantas
- Metagenomic Systems Biology: Metabolic Modeling and Multi-Meta-Omic Analysis of the Human Microbiome – Elhanan Borenstein
- Metabolomics by mass spectrometry based molecular networking and spatial mapping – Neha Garg
Proficiency testing for bacterial whole genome sequencing: an end-user survey of current capabilities, requirements and priorities – Jacob Moran-Gilad – BMC Infectious Diseases
Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis – Yuzhen Ye, Haixu Tang – ArXiv
Single-cell genomics-based analysis of virus–host interactions in marine surface bacterioplankton – Jessica M Labonté – The ISME Journal
Applying meta-pathway analyses through metagenomics to identify the functional properties of the major bacterial communities of a single spontaneous cocoa bean fermentation process sample – Koen Illeghems – Food Microbiology
Size-fraction partitioning of community gene transcription and nitrogen metabolism in a marine oxygen minimum zone – Sangita Ganesh – The ISME Journal
Transcriptomic evidence for microbial sulfur cycling in the eastern tropical North Pacific oxygen minimum zone – Molly Carolan and J Michael Beman – Frontiers in Microbiology
Review: Progress and Challenges in Developing Metabolic Footprints from Diet in Human Gut Microbial Cometabolism – Linda C Duffy – Journal of Nutrition
Microbial Ecology
Bacterial adaptation to sublethal antibiotic gradients can change the ecological properties of multitrophic microbial communities – Ville-Petri Friman – Proceedings B
Local–global overlap in diversity informs mechanisms of bacterial biogeography – Joshua A Livermore – The ISME Journal
Techniques
Assessing the performance of the Oxford Nanopore Technologies MinION – T. Laver – Biomolecular Detection and Quantification
Next-generation sequencing data analysis on cloud computing – Taesoo Kwon – Genes & Genomics
Microbes in the news
It’s a microbe’s world…we’re just living and dying in it – Margaret Leigh Sinrod – SciTechNow
May deadline: 2015 MO BIO Microbiome Awards – MoBIO
After cancer diagnosis, MIT student 3-D prints tumor, has microbiome analyzed – Nidhi Subbaraman – BetaBoston
Most of the text appears stolen from an article by Lita Proctor: Human Microbiome: Quiz – Target Health
Video: Why Your Beard Is Disgusting – Discovery News
Episode 4 of The Microbiome Podcast: What’s hot in the microbiome field with Kristina Campbell – American Microbiome Institute
Solving the complex problem of recurrent C. diff with a simple solution:
Physician scientists are using fecal transplants to break the deadly cycle of a killer infection – Bryan Goodchild and Ellie Castano – University of Massachusetts Medical School
Gut Bacteria May Influence Parkinson’s Risk, Phenotype – Pauline Anderson – Medscape
Summing up: Bassis et al.’s take on the influence of the URT on other human-associated biogeographies – Fiona Whelan – Human Microbiome Journal Club:
Under the microscope, strong-swimming swamp bacteria spontaneously organize into crystals – Phys.org
Science, publishing, and career
Female peers in small work groups enhance women’s motivation, verbal participation, and career aspirations in engineering – Nilanjana Dasgupta – PNAS USA
Bik’s Picks
How California can survive the drought — State is not in complete control – Danielle Venton – Nature
The Brontosaurus Is Back, Baby – Rich Juzwiak – Gawker
Endangered Tortoises Feasting on Invasive Plants – Richard Farrell – Discovery
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Microbiome Digest - Bik's Picks 