4 October, 2018

Today’s digest is full of exciting wine and animal microbiome studies!😁🐌🍷

General Microbiome

Editorial: Microbe and host lipids.Nigou J. Biochimie

Obesity alters composition and diversity of the oral microbiota in patients with type 2 diabetes mellitus independently of glycemic control.Tam J. PLoS One

Impact of the preoperative use of synbiotics in colorectal cancer patients: A prospective, randomized, double-blind, placebo-controlled study. Polakowski CB

The time response of anaerobic digestion microbiome during an organic loading rate shock. Braz GHR. Applied Microbiology and Biotechnology

REVIEW: Childhood weight gain and oral microbiota.Greenhill C. Nature Reviews Endocrinology

Glycan recognition at the saliva – Oral microbiome interface.Cross BW, Ruhl S. Cellular Immunology.

Loss of murine Paneth cell function alters the immature intestinal microbiome and mimics changes seen in neonatal necrotizing enterocolitis. Lueschow SR. PLoS One

Direct Utilization of Organic Nitrogen by Phytoplankton and Its Role in Nitrogen Cycling Within the Southern California Bight. Morando M. Frontiers in Microbiology.

Persistence and reversal of plasmid-mediated antibiotic resistance.Lopatkin AJ. Nature Communications

Gut Microbiome

REVIEW: Effects of Metabolites Derived From Gut Microbiota and Hosts on Pathogens.Li Z.Frontiers in Cellular and Infection Microbiology

Food and Wine Microbiome

The effect of sulfur dioxide addition at crush on the fungal and bacterial communities and the sensory attributes of Pinot gris wines. Morgan SC. International Journal of Food Microbiology

Techniques

Comparison of sampling methods for profiling cervicovaginal microbiome in rhesus macaques. Schmidt BA. Journal of  Medical Primatology.

Qiita: rapid, web-enabled microbiome meta-analysis.Gonzalez A. Nature Methods

Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.Rotimi AM. BMC Bioinformatics

Animal Microbiome and Experiments

White spot syndrome virus (WSSV) infection impacts intestinal microbiota composition and function in Litopenaeus vannamei.Wang Jl; Fish and Shellfish Immunology

Dietary or supplemental fermentable fiber intake reduces the presence of Clostridium XI in mouse intestinal microbiota: The importance of higher fecal bacterial load and density.Zheng W. PLoS One

<i>Diplogastrellus</i> nematodes are sexually transmitted mutualists that alter the bacterial and fungal communities of their beetle host.Ledón-Rettig CC. PNAS

The response of ruminal fermentation, epithelium-associated microbiota, and epithelial barrier function to severe feed restriction in pregnant ewes.Hu F. Journal of Animal Science

Rabbit Microbiota Changes Throughout the Intestinal Tract. Velasco-Galilea M. Frontiers in Microbiology

Antibiotic treatment of rat dams affects bacterial colonization and causes decreased weight gain in pups. Tulstrup MV. Communications Biology

Metagenomic analysis of nitrogen-cycling genes in upper Mississippi river sediment with mussel assemblages.Black EM. Microbiology Open

Effect of Different Disinfectants on Bacterial Aerosol Diversity in Poultry Houses.Jiang L. Frontiers in Microbiology

Effects of organic acid and medium chain fatty acid blends on the performance of sows and their piglets.  Lan R. Animal Science Journal

Microbial community composition and electricity generation in cattle manure slurry treatment using microbial fuel cells: effects of inoculum addition. Xie B. Environmental Science and Pollution Research

Plant, Soil, and Air Microbiome

Response of soil enzymes, functional bacterial groups, and microbial communities exposed to sudan I-IV. Teng Y. Ecotoxicology and Environmental Safety

Erratum: “Comparative Genomics of the Genus Lactobacillus Reveals Robust Phylogroups That Provide the Basis for Reclassification”.Salvetti E. Applied and Environmental Microbiology

Protist species richness and soil microbiome complexity increase towards climax vegetation in the Brazilian Cerrado. de Araujo ASF. Communications Biology

Application of phosphate solubilizing bacteria in immobilization of Pb and Cd in soil.Yuan Z. Environmental Science and Pollution Research

Inland Waters and Marine Microbiome

Impact of Phaeobacter inhibens on marine eukaryote-associated microbial communities.Dittmann KK. Environmental Microbiology Reports

Novel T4 bacteriophages associated with black band disease in corals.Buerger P. Environmental Microbiology

Environmental conditions affect activity and associated microorganisms of marine sponges.Batista D. Marine Environmental Research

The link between the microbial ecology, gene expression, and biokinetics of denitrifying polyphosphate-accumulating systems under different electron acceptor combinations.Vieira A. Applied Microbiology and Biotechnology

Antibiotics/Probiotics

Ecology determines how low antibiotic concentration impacts community composition and horizontal transfer of resistance genes. Cairns J. Communications Biology

Metabolome/ Proteomics

Metaproteomics Study of the Gut Microbiome.Lai LA. Methods Molecular Biology: Functional Proteomics

COMMENTARY: Making the Case for Functional Proteomics. Perkins RC. Methods Molecular Biology: Functional Proteomics

REVIEW:Metabolome analysis for investigating host-gut microbiota interactions.Chen MX. Journal of Formosan Medical Association

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