General microbiome
[Resource]BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures – Geistlinger et al. – Nature Biotechnology
Human oral microbiome
[REVIEW]The oral microbiome: diversity, biogeography and human health – Baker et al. – Nature Reviews Microbiology
Dysbiosis of oral microbiome persists after dental treatment-induced remission of periodontal disease and dental caries – Yama et al. – mSystems
Human nearly-sterile sites (blood, organs, brain)
Proton pump inhibitor treatment aggravates bacterial translocation in patients with advanced cirrhosis and portal hypertension – Sturm et al. – mBio
Human gut microbiome
A faecal metabolite signature of impaired fasting glucose: results from two independent population-based cohorts – Nogal et al. – Diabetes
Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis – Wang et al. – Microbiology Spectrum
Animal microbiome
Langerhans cells shape postnatal oral homeostasis in a mechanical-force-dependent but microbiota and IL17-independent manner – Jaber et al. – Nature Communications
Specific pathway abundances in the neonatal calf faecal microbiome are associated with susceptibility to Cryptosporidium parvum infection: a metagenomic analysis – Hares et al. – Animal Microbiome
Phage-microbe dynamics after sterile faecal filtrate transplantation in individuals with metabolic syndrome: a double-blind, randomised, placebo-controlled clinical trial assessing efficacy and safety – Wortelboer et al. – Nature Communications
Gut microbiota of old mice worsens neurological outcome after brain ischemia via increased valeric acid and IL-17 in the blood – Zeng et al. – Microbiome
Plant, root, and soil microbiome
Different bacterial and fungal community patterns in restored habitats in coal-mining subsidence areas – Wang et al. – Environmental Science and Pollution Research
Microbiome Digest - Bik's Picks 