Today’s midweek digest includes a brilliant review on the occurrence of HGT within human holobiont and a new approach to analysing microbiome data
General Microbiome
REVIEW: Prokaryotic horizontal gene transfer within the human holobiont: ecological-evolutionary inferences, implications and possibilities.Sitaraman R. Microbiome
Epidemiological aspects of healthcare-associated infections and microbial genomics.Mirande C. Europeans Journal of Clinical Microbiology and Infectious Diseases
Association between Cigarette Smoking Status and Composition of Gut Microbiota: Population-Based Cross-Sectional Study. Lee SH. Journal of Clinical Medicine
REVIEW: Proteomics and the microbiome: pitfalls and potential.Lin H. Expert Review of Proteomics
Biological films adhering to the oral soft tissues: structure, composition and potential impact on taste perception.Neyraud E. Journal of Texture Studies
Restriction enzyme digestion of host DNA enhances universal detection of parasitic pathogens in blood via targeted amplicon deep sequencing. Flaherty BR. Microbiome
Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosis.Jarett JK. Microbiome
The Extended Genotype: Microbially Mediated Olfactory Communication.Carthey AJR. Trends in Ecology and Evolution
Ceftriaxone administration disrupts intestinal homeostasis, mediating non-inflammatory proliferation and dissemination of commensal enterococci.Chakraborty R. Infection and Immunity
Gut Microbiome
Experimental evaluation of the importance of colonization history in early-life gut microbiota assembly.Martínez I. eLIFE
Human gut <i>Bacteroides</i> capture vitamin B<sub>12</sub> via cell surface-exposed lipoproteins.Wexler AG. eLIFE
Structural basis for the role of serine-rich repeat proteins from <i>Lactobacillus reuteri</i> in gut microbe-host interactions.Sequeira S. PNAS
Rapid and complete dehalogenation of halonitromethanes in simulated gastrointestinal tract and its influence on toxicity. Yin J. Chemosphere.
Diet: Cause or Consequence of the Microbial Profile of Cholelithiasis Disease?Gutiérrez-Díaz I. Nutrients
Immobilization stress-induced Escherichia coli causes anxiety by inducing NF-κB activation through gut microbiota disturbance. Jang HM. Scientific Reports
Salmonella stimulates pro-inflammatory signalling through p21-activated kinases bypassing innate immune receptors.Sun H. Nature Microbiology
Lung Microbiome
Deciphering the Lung Microbiome: Implications for Lung Health and Disease.Johnson MM. Respiration
Plant and Soil Microbiome
Assessment of the bacterial community structure in shallow and deep sediments of the Perdido Fold Belt region in the Gulf of Mexico. Sánchez-Soto Jiménez MF. PeerJ.
Insight into Bacterial Community Diversity and Monthly Fluctuations of Medicago sativa Rhizosphere Soil in Response to Hydrogen Gas Using Illumina High-Throughput Sequencing. Li Z. Current Microbiology
Molecular characterization and detection of 16SrIII group phytoplasma associated with Huanglongbing symptoms.Wulff NAA. Phytopathology
Water Microbiome
Analysis of Bacterial Community Structure of Activated Sludge from Wastewater Treatment Plants in Winter. Xu S. BioMed Research International
Biological As(III) oxidation in biofilters by using native groundwater microorganisms.Crognale S. Science of the Total Environment
Animal Experiments and Microbiome
Lignocellulose degradation at the holobiont level: teamwork in a keystone soil invertebrate. Bredon M. Microbiome
The impact of chemerin or chemokine-like receptor 1 loss on the mouse gut microbiome.Dranse HJ. PeerJ
Techniques
KERNEL-PENALIZED REGRESSION FOR ANALYSIS OF MICROBIOME DATA.Randolph TW. The Annals of Applied Statistics