Have a nice Tuesday! Today, in Microbiome Digest: reviews about the role of gut microbiota and neuroimmune interactions in multiple sclerosis, gut microbiome and transplantation and the publication of a guidelines for the use of fecal microbiota transplant for C. difficile infection, and more!

 

Human and General Microbiome

Review: Gut microbiota, cannabinoid system and neuroimmune interactions: New perspectives in multiple sclerosis – L. Mestre –  Biochemical Pharmacology

Recent advances in basic science: Small metabolites, possible big changes: a microbiota-centered view of non-alcoholic fatty liver disease – Huikuan Chu – Gut

Review: Necrotizing enterocolitis: The intestinal microbiome, metabolome and inflammatory mediators – Josef Neu – Seminars in Fetal and Neonatal Medicine

Review: Challenges and Approaches in Microbiome Research: From Fundamental to Applied – Chrysi Sergaki – Frontiers in Plant Science

Editorials: The gut microbiome and transplantation: An amazon jungle – Shivank Madan – The Journal of Heart and Lung Transplantation

The use of faecal microbiota transplant as treatment for recurrent or refractory Clostridium difficile infection and other potential indications: joint British Society of Gastroenterology (BSG) and Healthcare Infection Society (HIS) guidelines – Benjamin H. Mullish – Journal of Hospital Infection

Transplanting the pulmonary virome: Dynamics of transient populations – Alicia B. Mitchell – The Journal of Heart and Lung Transplantation

Shifts in intestinal microbiota after duodenal exclusion favor glycemic control and weight loss: a randomized controlled trial – Ramon V. Cortez – Surgery for Obesity and Related Diseases

Paired analysis of the microbiota between surface tissue swabs and biopsies from pediatric patients undergoing adenotonsillectomy – James Johnston – International Journal of Pediatric Otorhinolaryngology

The bacterial community and local lymphocyte response are markedly different in patients with recurrent tonsillitis compared to obstructive sleep apnoea – James Johnston  – International Journal of Pediatric Otorhinolaryngology

Diet during Pregnancy and Infancy and the Infant Intestinal Microbiome – Jessica H. Savage – The Journal of Pediatrics

Study of Microbiomes in Aseptically Collected Samples of Human Breast Tissue Using Needle Biopsy and the Potential Role of in situ Tissue Microbiomes for Promoting Malignancy – Shen Meng – Frontiers in Oncology

Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota – Raul Y Tito – Gut

Low nadir CD4+ T-cell counts predict gut dysbiosis in HIV-1 infection – Yolanda Guillén – Mucosal Immunology

Detecting eukaryotic microbiota with single-cell sensitivity in human tissue – Susanne Lager – Microbiome

 

Animal Microbiome

Functional Gut Microbiota Remodeling Contributes to the Caloric Restriction-Induced Metabolic Improvements – Salvatore Fabbiano – Cell Metabolism

An intact microbiota is required for the gastrointestinal toxicity of the immunosuppressant mycophenolate mofetil – Kyle L. Flannigan – The Journal of Heart and Lung Transplantation

Intestinal Pathology and Gut Microbiota Alterations in a Methyl-4-phenyl-1,2,3,6-tetrahydropyridine (MPTP) Mouse Model of Parkinson’s Disease – Feng Lai – Neurochemical Research

Environmental temperature alters the digestive performance and gut microbiota of a terrestrial amphibian – Samantha S. Fontaine – Journal of Experimental Biology

Probiotic product enhances susceptibility of mice to cryptosporidiosis – Bruno C. M. Oliveira – Applied and Environmental Microbiology

Gut microbiome correlates with altered striatal dopamine receptor expression in a model of compulsive alcohol seeking – Kshitij S. Jadhav – Neuropharmacology

Composition of the teat canal and intramammary microbiota of dairy cows subjected to antimicrobial dry cow therapy and internal teat sealant – Hooman Derakhshani – Journal of Dairy Science

Bacteria and bacterial products: Foe and friends to Caenorhabditis elegans – Fazlurrahman Khan – Microbiological Research

Enterobacteriaceae are essential for the modulation of colitis severity by fungi – Bruno Sovran – Microbiome

Impacts of polystyrene microplastic on the gut barrier, microbiota and metabolism of mice – Yuanxiang Jin – Science of The Total Environment

Data Article: Data on changes to mucosal inflammation and the intestinal microbiota following dietary micronutrients in genetically susceptible hosts – J.F. Pierre – Data in Brief

 

Food Microbiome

A vegetable fermentation facility hosts distinct microbiomes reflecting the production environment – Jonah E. Einson – Applied and Environmental Microbiology

Lifestyles of sourdough lactobacilli – Do they matter for microbial ecology and bread quality? – Michael G. Gänzle – International Journal of Food Microbiology

Cheese brines from Danish dairies reveal a complex microbiota comprising several halotolerant bacteria and yeasts – Martin Kragelund Haastrup – International Journal of Food Microbiology

 

Soil or Waste Microbiome

Functional biodiversity and plasticity of methanogenic biomass from a full-scale mesophilic anaerobic digester treating nitrogen-rich agricultural wastes – J.Ruiz-Sánchez – Science of The Total Environment

Distinct rhizosphere effect on active and total bacterial communities in paddy soils – Hu Li – Science of The Total Environment

Arsenic contamination influences microbial community structure and putative arsenic metabolism gene abundance in iron plaque on paddy rice root – Min Hu – Science of The Total Environment

Compost-bulking agents reduce the reservoir of antibiotics and antibiotic resistance genes in manures by modifying bacterial microbiota – Jin Zhang – Science of The Total Environment

 

Beneficial Microbes and Compounds

Cross-feeding amongst probiotic bacterial strains on prebiotic inulin involving the extracellular exo-inulinase of Lactobacillus paracasei strain W20 – Markus C.L. Boger – Applied and Environmental Microbiology

Identification of naringin metabolites mediated by human intestinal microbes with stable isotope-labeling method and UFLC-Q-TOF-MS/MS – Taobin Chen – Journal of Pharmaceutical and Biomedical Analysis

 

Bioinformatics

A two-stage hidden Markov model design for biomarker detection, with application to microbiome research – Yi-Hui Zhou – Statistics in Biosciences