Comparison of the cottage cheese and artisanal cheese microbiota, no microbes found in amniotic fluid from healthy term pregnancies, impacts of ocean warming on the oyster microbiome.
General microbiome
Molecular (Me)micry? – Orly Avni – Cell Host & Microbe
Pregnancy and early life
Amniotic fluid from healthy term pregnancies does not harbor a detectable microbial community – Efrem S Lim – Microbiome
Multi-site human microbiome
Data on the gut and saliva microbiota from a cohort of atherosclerosis patients determined by 16S rRNA gene sequencing – Gregory B Gloor – Data in Brief
Human skin microbiome
Antiseptic Agents Elicit Short-Term, Personalized and Body Site-Specific Shifts in Resident Skin Bacterial Communities – Adam J SanMiguel – The Journal of Investigative Dermatology
Human gut microbiome
Review: Systematic review assessing the effectiveness of dietary intervention on gut microbiota in adults with type 2 diabetes – David Houghton – Diabetologia
Animal experiments
Increased butyrate priming in the gut stalls microbiome associated-gastrointestinal inflammation and hepatic metabolic reprogramming in a mouse model of Gulf War Illness – Ratanesh Kumar Seth – Toxicology and Applied Pharmacology
Light exposure influences the diurnal oscillation of gut microbiota in mice – Guangyan Wu – Biochemical and Biophysical Research Communications
Early-Life Antibiotic-Driven Dysbiosis Leads to Dysregulated Vaccine Immune Responses in Mice – Miriam Anne Lynn – Cell Host & Microbe
The effect of the timing of exposure to Campylobacter jejuni on the gut microbiome and inflammatory responses of broiler chickens – Phillippa L Connerton – Microbiome
Animal microbiome
Potential impacts of hypoxia and a warming ocean on oyster microbiomes – Bushra Khan – Marine Environmental Research
Mixed-Mode Transmission Shapes Termite Gut Community Assemblies – Rafael R da Costa – Trends in Microbiology
Plant, root, and soil microbiome
Effect of compost application on the dynamics of carbon in a nectarine orchard ecosystem – E Baldi – Science of the Total Environment
Review: Current research trends on plastic pollution and ecological impacts on the soil ecosystem: A review – Yooeun Chae – Environmental Pollution
Community structure and plant growth-promoting potential of cultivable bacteria isolated from Cameroon soil – Gylaine Vanissa Tchuisseu Tchakounté – Microbiological Research
Characterisation of antagonistic yeasts for biocontrol applications on apples or in soil by quantitative analyses of synthetic yeast communities – Simon Gross – Yeast
Water and extremophile microbiome
Microbial ecology of two hot springs of Sikkim: Predominate population and geochemistry – Ishfaq Nabi Najar – Science of the Total Environment
Exploring abundance, diversity and variation of a widespread antibiotic resistance gene in wastewater treatment plants – Ziyan Wei – Environment International
Antimicrobial resistance and potential virulence of Vibrio parahaemolyticus isolated from water and bivalve mollusks from Bahia, Brazil – Irana Paim Silva – Marine Pollution Bulletin
Diversity and distribution of Archaea in global estuarine ecosystems – Xiaobo Liu – Science of the Total Environment
Microbes in space
Acute exposure to space flight results in evidence of reduced lymph Transport, tissue fluid Shifts, and immune alterations in the rat gastrointestinal system – W E Cromer – Life Sciences in Space Research
Food microbiology
Using PacBio sequencing to investigate the bacterial microbiota of traditional Buryatian cottage cheese and comparison with Italian and Kazakhstan artisanal cheeses – Hao Jin – Journal of Dairy Science
Salmonella Cold Stress Response: Mechanisms and Occurrence in Foods – Steven C Ricke – Advances in Applied Microbiology
Probiotics/prebiotics
Strategies to improve the functionality of probiotics in supplements and foods – Claude P Champagne – Current Opinion in Food Science
Phages and viruses
Pre-print: Diversity of active viral infections within the Sphagnum microbiome – Joshua M A Stough – bioRxiv
Review: Composition of gut microbiota and its influence on the immunogenicity of oral rotavirus vaccines – Cliff A Magwira – Vaccines
Metabolomics
Review: A Review on Human Fecal Metabolomics: Methods, Applications and the Human Fecal Metabolome Database – Naama Karu – Analytica Chimica Acta
More microbes
Critical knowledge gaps and research needs related to the environmental dimensions of antibiotic resistance – D G Joakim Larsson – Environment International
Pingback: September 17, 2018 | Microbiome Digest - Bik's Picks