Of special note today: gut microbiota species expressing orthologs of human Ro60 might be involved in triggering and sustaining chronic autoimmunity in lupus; The portal vein blood microbiome in patients with liver cirrhosis; A randomized clinical study suggests dietary promotion of short chain fatty acid producing gut microbes as an effective treatment for type 2 diabetes; and the sexual dimorphism of root, flower and leaf microbiomes in the wild strawberry plant
Events and jobs
Clinical Laboratory Technologist IV (SL-1), Microbiology Laboratory – Stony Brook University – NY
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General microbiome
Review: Discovering antibiotics from the global microbiome – Yick Chong Lam – Nature Microbiology
Pregnancy and early life
Review: Milk Glycans and Their Interaction with the Infant-Gut Microbiota – Nina Kirmiz – Annual Review of Food Science and Technology
Multi-site human microbiome
*Commensal orthologs of the human autoantigen Ro60 as triggers of autoimmunity in lupus – Teri M. Greiling – Science Translational Medicine
Human nearly-sterile sites
*Circulating microbiome in blood of different circulatory compartments – Robert Schierwagen – BMJ Blood
Human gut microbiome
*Gut bacteria selectively promoted by dietary fibers alleviate type 2 diabetes – Liping Zhao – Science
Review: Impact of dietary compounds on cancer-related gut microbiota and microRNA – Muhammad Shahid Riaz Rajoka – Applied Microbiology and Biotechnology
Review: Influence of Altered Gut Microbiota Composition on Aging and Aging-Related Diseases – Jeonghyun Choi – Journal of Lifestyle Medicine
Review: Gut microbiome modulates efficacy of immune checkpoint inhibitors
Ming Yi – Journal of Hematology & Oncology
Protocol: Wisconsin microbiome study, a cross-sectional investigation of dietary fibre, microbiome composition and antibiotic-resistant organisms: rationale and methods – Shoshannah Eggers – BMJ Journal
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Animal experiments
MicroRNA-146a Deficiency Protects against Listeria monocytogenes Infection by Modulating the Gut Microbiota – Chong-Tao Du – International Journal of Molecular Sciences
Loss of microRNA-21 Influences the Gut Microbiota Causing Reduced Susceptibility in a Murine Model of Colitis – Daniel G W Johnston – Journal of Crohn’s and Colitis
Towards an Integrative Understanding of tRNA Aminoacylation–Diet–Host–Gut Microbiome Interactions in Neurodegeneration – Elena L. Paley – Nutrients
Resilience of small intestinal beneficial bacteria to the toxicity of soybean oil fatty acids – Sara C Di Rienzi – eLife
Animal microbiome
Assessment of microbiome changes after rumen transfaunation: implications on improving feed efficiency in beef cattle – Mi Zhou – BMC Microbiology
Seasonal and algal diet-driven patterns of the digestive microbiota of the European abalone Haliotis tuberculata, a generalist marine herbivore – Angélique Gobet – BMC Microbiology
Diverse laboratory colonies of Aedes aegypti harbor the same adult midgut bacterial microbiome – Laura B. Dickson – BMC Parasites & Vectors
Plant, root, and soil microbiome
*The effects of host species and sexual dimorphism differ among root, leaf and flower microbiomes of wild strawberries in situ – Na Wei – Scientific Reports
The potential of plant microbiota in reducing postharvest food loss – Franziska Buchholz – Microbial Biotechnology
Root microbiota shift in rice correlates with resident time in the field and developmental – Jingying Zhang – Science China Life Sciences
Microbial Ecology
Allometry and Ecology of the Bilaterian Gut Microbiome – Scott Sherrill-Mix – mBio
Preprint: Changes in the genetic requirements for microbial interactions with increasing community complexity – Manon Morin – bioRxiv
Built environment
Drinking water microbiome assembly induced by water stagnation – Fangqiong Ling – The ISME Journal
Food microbiology
Constraint-based modeling in microbial food biotechnology – Martin H. Rau – Biochemical Society Transactions
Characterization of microbial community structure and metabolic potential using Illumina MiSeq platform during the black garlic processing – Zhichang Qiu – Food Research International
Guidance on the characterisation of microorganisms used as feed additives or as production organisms – EFSA Panel on Additives and Products or Substances used in Animal Feed (FEEDAP) – EFSA Journal
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Probiotics / prebiotics
Probiotic treatment reduces the autistic-like excitation/inhibition imbalance in juvenile hamsters induced by orally administered propionic acid and clindamycin – Afaf El-Ansary – Metabolic Brain Disease
Review: A review of probiotic supplementation in healthy adults: helpful or hype? – Saman Khalesi – European Journal of Clinical Nutrition
Fecal Transplants
Effect of Vegan Fecal Microbiota Transplantation on Carnitine‐ and Choline‐Derived Trimethylamine‐N‐Oxide Production and Vascular Inflammation in Patients With Metabolic Syndrome – Loek P. Smits – Journal of the American Heart Association
Bioinformatics
Review: Exploring Linkages between Taxonomic and Functional Profiles of the Human Microbiome – Morgan G. I. Langille – mSystems
Techniques
Hybridization capture reveals microbial diversity missed using current profiling methods – Cyrielle Gasc – BMC Microbiology
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Microbes in the news
Just passing through: fungi not part of the gut – Fungus species don’t play a role in healthy human microbiomes – Andrew Masterson – Cosmos
Bacteria and Art
Art and biology students participate in creative collaboration – Sierra Guardiola – The Ithacan