Midgut microbiome of a vector for leishmaniasis, reviews on the human oral microbiome, using microfluidics to visualize live root-bacteria interactions, new open-access publishing project from the Gates Foundation.
General microbiome
Lotka-Volterra pairwise modeling fails to capture diverse pairwise microbial interactions – Babak Moment – eLIFE
Human oral microbiome
Review: Oral Microbiome and Nitric Oxide: the Missing Link in the Management of Blood Pressure – Nathan S. Bryan – Current Hypertension Reports
Review: Microbiota, Immune Subversion, and Chronic Inflammation – Carolyn D Kramer – Frontiers in Microbiology
Human gut microbiome
Highlight: Shaping the gut microbiome from the pancreas – Wei Wong – Science Signaling
Review: Mechanisms and consequences of intestinal dysbiosis – G. Adrienne Weiss – Cellular and Molecular Life Sciences
Animal experiments
Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse – Alessandro Tanca – Frontiers in Microbiology
Helminth-induced alterations of the gut microbiota exacerbate bacterial colitis – C Su – Mucosal Immunology
Sex-related alterations of gut microbiota composition in the BTBR mouse model of autism spectrum disorder – Lorena Coretti – Scientific Reports
Milk Fat Globule Membrane Supplementation in Formula Modulates the Neonatal Gut Microbiome and Normalizes Intestinal Development – Ganive Bhinder – Scientific Reports
Gut metagenomic analysis reveals prominent roles of Lactobacillus and cecal microbiota in chicken feed efficiency – Wei Yan – Scientific Reports
Animal microbiome
An integrated overview of the midgut bacterial flora composition of Phlebotomus perniciosus, a vector of zoonotic visceral leishmaniasis in the Western Mediterranean Basin – Wael Fraihi – PLOS Neglected Tropical Diseases
Plant, root, and soil microbiome
* Live imaging of root–bacteria interactions in a microfluidics setup – Hassan Massalha – PNAS
Mechanisms of nitrogen deposition effects on temperate forest lichens and trees – Therese S. Carter – Ecosphere
Research priorities for harnessing plant microbiomes in sustainable agriculture – Posy E Busby – PLOS Biology
Fe plaque-related aquatic uranium retention via rhizofiltration along a redox-state gradient in a natural Phragmites australis Trin ex Steud. wetland – Weqing Wang – Environmental Science and Pollution Research
Functional and phylogenetic diversity of cultivable rhizobacterial endophytes of sorghum [Sorghum bicolor (L.) Moench] – Venkadasamy Govindasamy – Antonie van Leeuwenhoek
Enhanced growth of halophyte plants in biochar-amended coastal soil: roles of nutrient availability and rhizosphere microbial modulation – Hao Zheng – Plant, Cell & Environment
Water and extremophile microbiome
Metagenomic Analysis of a Complex Community Present in Pond Sediment – Vivek Negi – Journal of Genomics
Probiotics/prebiotics
The preliminary study of prebiotic potential of Polish wild mushroom polysaccharides: the stimulation effect on Lactobacillus strains growth – Renata Nowak – European Journal of Nutrition
Probiotics may delay the progression of nonalcoholic fatty liver disease by restoring the gut microbiota structure and improving intestinal endotoxemia – Li Xue – Scientific Reports
Bioinformatics
MIPE: A metagenome-based community structure explorer and SSU primer evaluation tool – Bin Zou – PLOS One
Metabolomics
Gas chromatography/mass spectrometry metabolomics of urine and serum from nonhuman primates exposed to ionizing radiation: Impacts on the tricarboxylic acid cycle and protein metabolism – Evan L Pannkuk – Journal of Proteome Research
Techniques
Review: Pretreatment methods of lignocellulosic biomass for anaerobic digestion – Farrukh Raza Amin – AMB Express
Comparison of Standard Culture-Based Method to Culture-Independent Method for Evaluation of Hygiene Effects on the Hand Microbiome – C Zapka – mBio
More microbes
Depleting Mycobacterium tuberculosis of the transcription termination factor Rho causes pervasive transcription and rapid death – Laure Botella – Nature Communications
A Pseudomonas T6SS effector recruits PQS-containing outer membrane vesicles for iron acquisition – Jinshui Lin – Nature Communications
Indole-Induced Activities of β-Lactamase and Efflux Pump Confer Ampicillin Resistance in Pseudomonas putida KT2440 – Jisun Kim – Frontiers in Microbiology
Microbes in the news
Microbiome: Puppy power – Sujata Gupta – Nature (Outlook section)
Biological underpinnings of chronic fatigue syndrome begin to emerge – Amy Maxmen – Nature (News section)
Bacteria from sewage are infecting coral reefs – Elena Motivans – ZME Science
Key research priorities for agricultural microbiomes identified – Phys Org
Viral Bacterial Parasites Called Phages Drive Co-Evolution of Gut Microbiome – MedicalResearch.com
MSU, Shedd Aquarium partnering to create healthier aquatic homes – EurekAlert
Painting with bacteria is a thing and BUGSS will show you how – Stephen Babcock – Technical.ly Baltimore
Microbes on the market
Marrone Bio Innovations and Evogene Advance Novel Bacteria and Related Proteins Beyond Discovery into Insecticidal Product Development Phase – GlobeNewswire – Yahoo!Finance
Science, publishing, and career
* Gates Foundation announces open-access publishing venture – Declan Butler – Nature (News section)
The readability of scientific texts is decreasing over time – Pontus Plavén-Sigray – bioRxiv
Amy’s non-microbiology picks
Iron minerals within specific microfossil morphospecies of the 1.88 Ga Gunflint Formation – Kevin Lepot – Nature Communications