This Monday, read about the stability within gut resident clonal populations of Enterobacteriaceae, significance of microbiome in personalized medicine, and impacts of intermittent supply on the drinking water microbiome. Happy reading!
General microbiome
Defining Microbiome Health through a Host Lens – Sean M. Gibbonsa – mSystems
*Review: The significance of microbiome in personalized medicine – Ava Behrouzi – Clinical and Translational Medicine
Moving towards a Robust Definition for a “Healthy” Indoor Microbiome – Karen C. Dannemiller – mSystems
Gut microbiome
*Rethinking gut microbiome residency and the Enterobacteriaceae in healthy human adults – Jonathan N. V. Martinson – ISME Journal
Rectal swabs in critically-ill patients provide discordant representations of the gut microbiome compared to stool samples: a brief methodologic report – Katherine Fair – bioRxiv
Development of a Covalent Inhibitor of Gut Bacterial Bile Salt Hydrolases – Arijit A. Adhikari – bioRxiv
Temporal Gut Microbial Changes Predict Recurrent Clostridium difficile in Patients with and without Ulcerative Colitis – Allen A. Lee – boRxiv
Alteration of Gut Microbiome in Lung Cancer Patients – Li Ming – bioRxiv
Respiratory microbiome
Microbiome disturbance and resilience dynamics of the upper respiratory tract in response to influenza A virus infection in humans and ferrets – Drishti Kaul – bioRxiv
High mortality from viral pneumonia in patients with cancer – Youn-Jung Ki – Infectious Diseases
Water microbiome
Global diversity and biogeography of bacterial communities in wastewater treatment plants – Linwei Wu – Nature Microbiology
*Understanding the impacts of intermittent supply on the drinking water microbiome – Quyen Melina Bautista-de los Santos – Current Opinion in Biotechnology
Animal microbiome
Exploration of the rumen microbial diversity and carbohydrate active enzyme profile of black Bengal goat using metagenomic approach – Prashant R. Suryawanshi – Animal Biotechnology
Assessing key microbial communities determining nitrogen transformation in composting of cow manure using illumina high-throughput sequencing – Yu Sun – Waste Management
Plant/root/soil microbiome
Root microbiota assembly and adaptive differentiation among European Arabidopsis populations – Thorsten Thiergart – bioRxiv
Response of Microbial Communities and Their Metabolic Functions to Drying–Rewetting Stress in a Temperate Forest Soil – Dong Liu – Microorganisms
Review: Rhizosphere size and shape: Temporal dynamics and spatial stationarity – Yakov Kuzyakov & Bahar S. Razavi – Soil Biology and Biochemistry
Phages and viruses
Production and characterization of novel ssRNA bacteriophage virus-like particles from metagenomic sequencing data – Ilva Lieknina – Journal of Nanobiotechnology
Techniques
PhenoGMM: Gaussian mixture modelling of microbial cytometry data enables efficient predictions of biodiversity – Peter Rubbens – bioRxiv