Have a good weekend!

Today, in this Digest we have a good amount of articles, including: a study showing the importance of the gut microbiota in the development of thrombosis; the effect of a probiotic on patients with coronary artery disease; a study about vaginal microbiota and menopause; a study gaining insights about the natural microbiota transmission;  associations between microbiota and exercise, and more!

 

Gut Microbiome

Microbial Transplantation With Human Gut Commensals Containing CutC Is Sufficient to Transmit Enhanced Platelet Reactivity and Thrombosis Potential – Sarah M. Skye  – Circulation Research. Comment about this paper in the Editorial: Microbiota-Derived Trimethylamine, The Missing Jigsaw Piece in Thrombosis? – Klytaimnistra Kiouptsi

Gut microbiome and type 2 diabetes: where we are and where to go? – Sapna Sharma – The Journal of Nutritional Biochemistry

The gut microbiome of Mexican children affected by obesity – Otoniel Maya-Lucas – Anaerobe

Endurance exercise and gut microbiota: A review – Núria Mach – Journal of Sport and Health Science

Fecal microbiota transplantation confers beneficial metabolic effects of diet and exercise on diet-induced obese mice – Zi-Lun Lai – Scientific Reports

Trimethylamine N-Oxide and Risk of Cardiovascular Disease and Mortality – Chanavuth Kanitsoraphan – Current Nutrition Reports

A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area – Timothy P. Jenkins – Scientific Reports

Clostridioides difficile uses amino acids associated with gut microbial dysbiosis in a subset of patients with diarrhea – Eric J. Battaglioli – Science Translational Medicine

Opportunistic bacteria confer the ability to ferment prebiotic starch in the adult cystic fibrosis gut – Yanan Wang – Gut Microbes

Towards an Individualized Nutrition Treatment: Role of the Gastrointestinal Microbiome in the Interplay Between Diet and Obesity – Solveig A. Adalsteinsdottir – Current Obesity Reports

Increasing Dietary Fiber Intake Is Associated with a Distinct Esophageal Microbiome – Yael R. Nobel – Clinical and Translational Gastroenterology

Clostridial Butyrate Biosynthesis Enzymes Are Significantly Depleted in the Gut Microbiota of Nonobese Diabetic Mice – Alessandro Tanca – mSphere

Modelling the role of microbial p-cresol in colorectal genotoxicity – Eiman Abdulla Al Hinai – Gut Microbes

Diet and Psychosis: A Scoping Review – M. Aucoin – Neuropsychobiology

Minireview: Inflammation and Gut-Brain Axis During Type 2 Diabetes: Focus on the Crosstalk Between Intestinal Immune Cells and Enteric Nervous System – Arnaud Bessac – Frontiers in Neuroscience

Effects of water decontamination methods and bedding material on the gut microbiota – Willie A. Bidot – PLOS One

Timing for the second fecal microbiota transplantation to maintain the long-term benefit from the first treatment for Crohn’s disease – Pan Li – Applied Microbiology and Biotechnology

Gut microbiome disruption altered the biotransformation and liver toxicity of arsenic in mice – Liang Chi – Archives of Toxicology

 

Early Life Microbiome

Gut Microbiota in the First 2 Years of Life and the Association with Body Mass Index at Age 12 in a Norwegian Birth Cohort – Maggie A. Stanislawski – mBio

Differences in the fecal microbiota of neonates born at home or in the hospital – Joan L. Combellick – Scientific Reports

Distinct mucosal microbial communities in infants with surgical necrotizing enterocolitis correlate with age and antibiotic exposure – Joann Romano-Keeler – PLOS One

 

Oral, Nasal and Respiratory Tract Microbiome

Keystone Species in Pregnancy Gingivitis: A Snapshot of Oral Microbiome During Pregnancy and Postpartum Period – Preethi Balan – Frontiers in Microbiology

The Oral Microbiota Is Modified by Systemic Diseases – D.T. Graves – Journal of Dental Research

Prospective Study of Oral Microbiome and Colorectal Cancer Risk in Low-income and African American Populations – Yaohua Yang – International Journal of Cancer

Species-level bacterial community profiling of the healthy sinonasal microbiome using Pacific Biosciences sequencing of full-length 16S rRNA genes – Joshua P. Earl – Microbiome

The effect of maxillary sinus antrostomy size on the sinus microbiome – Alexander S. Kim – International Forum of Allergy & Rhinology

Microbiome dataset from the upper respiratory tract of patients living with HIV, HIV/TB and TB from Myanmar – Kyaw Soe Htun – Data in Brief

Variations of the lung microbiome and immune response in mechanically ventilated surgical patients – Ryan M. Huebinger – PLOS One

Root Microbiota in Primary and Secondary Apical Periodontitis – Serge Bouillaguet – Frontiers in Microbiology

 

Reproductive / Urinary Tract Microbiome and Health

Association between the vaginal microbiota, menopause status, and signs of vulvovaginal atrophy – Rebecca M. Brotman – Menopause

Association of Pelvic Inflammatory Disease with Risk of Endometriosis: A Nationwide Cohort Study Involving 141,460 Individuals – Fei-Wu Tai – Journal of Clinical Medicine

 

Beneficial Microbes and Compounds

Lactobacillus plantarum 299v Supplementation Improves Vascular Endothelial Function and Reduces Inflammatory Biomarkers in Men With Stable Coronary Artery Disease – Mobin Malik – Circulation Research. About this article: The Microbiome and Endothelial Function – Jhansi L. Leslie 

Probiotics for gastrointestinal and liver diseases: an updated review of the published literature – Francis E. Dailey – Endocrine, Metabolic & Immune Disorders – Drug Targets

Review: Immunological Tolerance and Function: Associations Between Intestinal Bacteria, Probiotics, Prebiotics, and Phages – Luis Vitetta – Frontiers in Immunology

Protective Effect of Pediococcus pentosaceus LI05 Against Clostridium difficile Infection in a Mouse Model – Qiaomai Xu – Frontiers in Microbiology

Mixture of Two Lactobacillus plantarum Strains Modulates the Gut Microbiota Structure and Regulatory T Cell Response in Diet-Induced Obese Mice – Jieun Lee – Molecular Nutrition & Food Research

Microbiota stability in healthy individuals after single-dose lactulose challenge-A randomized controlled study – Sandra Y. Wotzka – PLOS One

Review: Interactions of Surface Exopolysaccharides From Bifidobacterium and Lactobacillus Within the Intestinal Environment – Nuria Castro-Bravo – Frontiers in Microbiology

Rapid differentiation of Lactobacillus species via metabolic profiling – Kundi Yang – Journal of Microbiological Methods

Combining probiotics and an angiotensin-II type 1 receptor blocker has beneficial effects on hepatic fibrogenesis in a rat model of nonalcoholic steatohepatitis – Yasuhiko Sawada – Hepatology Research

Antidepressant Effects of Rosemary Extracts Associate With Anti-inflammatory Effect and Rebalance of Gut Microbiota – Ying Guo – Frontiers in Pharmacology

Association of dietary fibre intake and gut microbiota in adults – Daniel Lin – British Journal of Nutrition

Effect of prebiotic and probiotic supplementation on neurodevelopment in preterm very low birth weight infants: findings from a meta-analysis – Ravi Prakash Upadhyay – Pediatric Research

Potential of Maintaining a Healthy Vaginal Environment by Two Lactobacillus Strains Isolated from Cocoa Fermentation – Ana Clara Correia Melgaço – BioMed Research International

Viability of microencapsulated Akkermansia muciniphila and Lactobacillus plantarum during freeze-drying, storage and in vitro simulated upper gastrointestinal tract passage – Martín Sebastián Marcial-Coba – Food & Function

Single probiotic supplement suppresses colitis-associated colorectal tumourigenesis by modulating inflammatory development and microbial homeostasis – Jingjing Rong – Journal of Gastroenterology and Hepatology

Exploring Effects of Chitosan Oligosaccharides on Mice Gut Microbiota in in vitro Fermentation and Animal Model – Chen Zhang – Frontiers in Microbiology

Microbiome Analysis of Biofilms of Silver Nanoparticle-Dispersed Silane-Based Coated Carbon Steel Using a Next-Generation Sequencing Technique – Akiko Ogawa – Antibiotics

Formation of silver nanoparticles by human gut microbiota – Naiyi Yin – Science of The Total Environment

 

Skin Microbiome

Effect of an Emollient on the Mycobiome of Atopic Dermatitis Patients – Jyotsna Chandra – Journal of Drugs in Dermatology

 

General Microbiome

Transmission modes of the mammalian gut microbiota – Andrew H. Moeller – Science

Ecologically informed microbial biomarkers and accurate classification of mixed and unmixed samples in an extensive cross-study of human body sites – Janko Tackmann – Microbiome

Repertoire of the gut microbiota from stomach to colon using culturomics and next-generation sequencing – Morgane Mailhe – BMC Microbiology

gcMeta: a Global Catalogue of Metagenomics platform to support the archiving, standardization and analysis of microbiome data – W. Shi – Nucleic Acid Research

Antibiotics and autoimmune and allergy diseases: Causative factor or treatment? – Anna Strzępa – International Immunopharmacology

Pearls: Bacteriophages shift the focus of the mammalian microbiota – Breck A. Duerkop – PLOS Pathogens

 

Environmental Microbiome

Bleaching-Associated Changes in the Microbiome of Large Benthic Foraminifera of the Great Barrier Reef, Australia – Martina Prazeres – Frontiers in Microbiology