Have a nice weekend! Today, in Microbiome Digest: an interesting study remarking the importance of personalization in the efficient use of probiotics, given their individualized impact in gut microbiota (Zmora et al., Cell); another interesting paper about the application of autologous FMT in patients in Post-Antibiotic use and a worsening effect of Probiotics (Suez et al., Cell). Today, we have also papers about the dysbiosis in coronary artery disease, a metagenome of the female reproductive tract, a trial about the role of antibiotics in IBS risk and more!

Human and General Microbiome

Post-Antibiotic Gut Mucosal Microbiome Reconstitution Is Impaired by Probiotics and Improved by Autologous FMT – Jotham Suez – Cell

Personalized Gut Mucosal Colonization Resistance to Empiric Probiotics Is Associated with Unique Host and Microbiome Features – Niv Zmora – Cell

The metagenome of the female upper reproductive tract – Chen Chen – GigaScience

Dysbiosis signatures of gut microbiota in coronary artery disease – Qi Zhu – Physiological Genomics

Review: The immunomodulatory role of probiotics in allergy therapy – Jafar Hajavi – Journal of Cellular Physiology

Efficient isolation and observation of the most complex human commensal, Demodex spp. – B. M. Clanner-Engelshofen – Experimental and Applied Acarology

Research Highlight: Boost microbiota studies – Wenjie Sun – Nature Nanotechnology

Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation – Joanna W. Szopinska – BMC Microbiology

Alterations and structural resilience of the gut microbiota under dietary fat perturbations – Cong Liu – The Journal of Nutritional Biochemistry

Antibiotics: a risk factor for irritable bowel syndrome in a population-based cohort – Laura Rindom Krogsgaard – Scandinavian Journal of Gastroenterology

Inter-relationship between diet, lifestyle habits, gut microflora, and the equol-producer phenotype: baseline findings from a placebo-controlled intervention trial – Remi Yoshikata – Menopause

Review: Effects of Sourdough on FODMAPs in Bread and Potential Outcomes on Irritable Bowel Syndrome Patients and Healthy Subjects – Leidiane A. A. Menezes – Frontiers in Microbiology

Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization – Hsin-Wen Chang – Microbiome

 

Animal Microbiome / Animal Experiments

Early-life exposure to gut microbiota from disease protected mice does not impact disease outcome in type 1 diabetes susceptible NOD mice – Jane A. Mullaney – Immunology and Cell Biology

Shifts in the Skin-Associated Microbiota of Hatchery-Reared Common Snook Centropomus undecimalis During Acclimation to the Wild – Andrea M. Tarnecki – Microbial Ecology

Habitat environments impacted the gut microbiome of long-distance migratory swan geese but central species conserved – Yueni Wu – Scientific Reports

Effects of mixed lactic acid bacteria on intestinal microbiota of mice infected with Staphylococcus aureus – Dayong Ren – BMC Microbiology

Green tea polyphenols modify gut-microbiota dependent metabolisms of energy, bile constituents and micronutrients in female Sprague-Dawley rats – Jun Zhou – The Journal of Nutritional Biochemistry

Time-restricted feeding causes irreversible metabolic disorders and gut microbiota shift in pediatric mice – Dandan Hu – Pediatric Research

Compositional and predicted functional analysis of the gut microbiota of Radix auricularia (Linnaeus) via high-throughput Illumina sequencing – Zongfu Hu – PeerJ

The Effect of Co-infection of Food-Borne Pathogenic Bacteria on the Progression of Campylobacter jejuni Infection in Mice – Gang Wang – Frontiers in Microbiology

Structural and Functional Alterations in the Microbial Community and Immunological Consequences in a Mouse Model of Antibiotic-Induced Dysbiosis – Ying Shi – Frontiers in Microbiology

 

Plant Microbiome

Endophytic Bacterial Community Structure and Function of Herbaceous Plants From Petroleum Hydrocarbon Contaminated and Non-contaminated Sites – Rhea Lumactud – Frontiers in Microbiology

 

Environmental Microbiome

The effects of emerging environmental contaminants on Stenotrophomonas maltophilia isolated from drinking water in planktonic and sessile states – Inês B.Gomes – Science of The Total Environment

Genetic and Functional Diversity of Bacterial Microbiome in Soils With Long Term Impacts of Petroleum Hydrocarbons – Anna Gałązka – Frontiers in Microbiology