June 15, 2018

Secondary metabolite biosynthetic genes from novel soil bacteria, a human viral protein cluster metagenomic database, sleep apnea symptoms alter the gut microbiota and metabolome.

Pregnancy and early life

16S ribosomal RNA-based gut microbiome composition analysis in infants with breast milk jaundice – Miao Duan – Open Life Sciences

Human respiratory microbiome

Pre-print: New insights into human nostril microbiome from the expanded Human Oral Microbiome Database (eHOMD): a resource for species-level identification of microbiome data from the aerodigestive tract – Isabel Fernández Escapa – bioRxiv

Human oral microbiome

Review: Live and let die: hydrogen peroxide production by the commensal flora and its role in maintaining a symbiotic microbiome – Sylvio Redanz – Molecular Oral Microbiology

Human nearly-sterile sites

Cultural Isolation and Characteristics of the Blood Microbiome of Healthy Individuals – Stefan Panaiotov – Advances In Microbiology

Human gut microbiome

Sex differences in NSAID-induced perturbation of human intestinal barrier function and microbiota – Shoko Edogawa – The FASEB Journal

Animal experiments

Intermittent Hypoxia and Hypercapnia, a Hallmark of Obstructive Sleep Apnea, Alters the Gut Microbiome and Metabolome – Anupriya Tripathi – mSystems

IL-1R and MyD88 Contribute to the Absence of a Bacterial Microbiome on the Healthy Murine Cornea – Stephanie J Wan – Frontiers in Microbiology

Aflatoxin B1 Disrupts Gut-Microbial Metabolisms of Short-Chain Fatty Acids, Long-Chain Fatty Acids, and Bile Acids in Male F344 Rats – Jun Zhou – Toxicological Sciences

Metabolome and gut microbiota variation with long-term intake of Panax ginseng extracts on rats – Yifan Sun – Food & Function

Animal microbiome

Partial incubation during egg laying reduces eggshell microbial loads in a temperate‐breeding passerine – Patricia B Bollinger – Journal of Avian Biology

Bacterial and Fungal Midgut Community Dynamics and Transfer Between Mother and Brood in the Asian Longhorned Beetle (Anoplophora glabripennis), an Invasive Xylophage – Charles J Mason – Microbial Ecology

Succession of embryonic and the intestinal bacterial communities of Atlantic salmon (Salmo salar) reveals stage‐specific microbial signatures – Jep Lokesh – MicrobiologyOpen

Plant, root, and soil microbiome

Novel soil bacteria possess diverse genes for secondary metabolite biosynthesis – Alexander Crits-Christoph – Nature

Environment and host as large-scale controls of ectomycorrhizal fungi – Sietse van der Linde – Nature

Studies on Quantitative Analysis of Rhizosphere and Non-Rhizosphere Mycoflora at Different Stages of Plant Growth in Different Varieties of Pigeon Pea [Cajanus cajan (L.) Millsp.] – V Jalander – International Journal of Pure & Applied Bioscience

The Functional Potential of the Rhizospheric Microbiome of an Invasive Tree Species, Acacia dealbata – Casper N Kamutando – Microbial Ecology

Review: Plant Growth Promoting Rhizobacteria: Blessing to Agriculture – Twisha S Patel – International Journal of Pure & Applied Bioscience

Inorganic Nitrogen Application Affects Both Taxonomical and Predicted Functional Structure of Wheat Rhizosphere Bacterial Communities – Vanessa N Kavamura – Frontiers in Microbiology

Water and extremophile microbiome

Metagenomics Reveals the Influence of Land Use and Rain on the Benthic Microbial Communities in a Tropical Urban Waterway – Gourvendu Saxena – mSystems

Phages and viruses

The Human Virome Protein Cluster Database (HVPC): A Human Viral Metagenomic Database for Diversity and Function Annotation – Ali H A Elbehery – Frontiers in Microbiology

Bioinformatics

BioSankey: Visualization of Microbial Communities Over Time – Alexander Platzer – Journal of Integrative Bioinformatics

Pre-print: Understanding trivial challenges of microbial genomics: An assembly example – Delphine Lariviere – bioRxiv

Microbes in the news

Faecal transplants could help preserve vulnerable species – Sara Reardon – Nature

Science, career, and publishing

Pre-print: Researchers preferentially collaborate with same-gendered colleagues across the life sciences – Luke Holman – bioRxiv

Pre-print: Attitudes, Perceptions and Barriers to Research and Publishing among Research and Teaching Staff: A Case Study – Stanley Irobekhian Reuben Okoduwa – bioRxiv

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