Brassicaceae plants-fungi associations, a feature on PCR bias during microbiome analysis, a thesis about viruses; preprints about Mobile-CRISPRi system on bacteria, what may happen to the intestinal microbiota when Lactobacillus reuteri intervenes; few non-microbio picks covering mental health, conservation policy, stem cell policy; and a lot more for our digest from Sunday.
General microbiome
Preprint: Mobile-CRISPRi: Enabling Genetic Analysis of Diverse Bacteria – JM Peters – bioRxiv
Preprint: Effect of Lactobacillus reuteri on intestinal microflora and immune parameters: involvement of sex differences – J He – biorXiv
Review: The Interplay Between the Microbiome and Cardiovascular Risk – BA
Klebsiella pneumoniae as a key trafficker of drug resistance genes from environmental to clinically important bacteria – KL Wyres – Current Opinion in Microbiology
Proteomic studies on lactic acid bacteria: A review – KS Vinusha – Biochemistry and Biophysics Reports
Multi-site human microbiome
Distinct shifts in the oral microbiota are associated with the progression and aggravation of mucositis during radiotherapy – J Hou – Radiotherapy and Oncology
Human skin microbiome
Skin microbiome changes in patients with interdigital tinea pedis – R Wang – British Journal of Dermatology
Human vaginal microbiome
The Vaginal Eukaryotic DNA Virome and Preterm Birth – KM Wylie – American Journal of Obstetrics and Gynecology
Systematic Review: The vaginal microbiota and its association with Human Papillomavirus, Chlamydia trachomatis, Neisseria gonorrhea and Mycoplasma genitalium infections: a systematic review and meta-analysis – J Tamarelle – Clinical Microbiology and Infection
Human gut microbiome
Review: Methods for studying gut microbiota: A primer for physicians – AN Sarangi – Journal of Clinical and Experimental Hepatology
Review: Effects of the Gut microbiota on Amygdalin and its use as an anti-cancer therapy: Substantial review on the key components involved in altering dose efficacy and toxicity – V Jaiswal – Biochemistry and Biophysics Reports
The ability of human intestinal anaerobes to metabolize different oligosaccharides: Novel means for microbiota modulation? – R Ose – Anaerobe
Clostridium difficile cure with fecal microbiota transplantation in a child with Pompe disease: a case report – DE Dow – Journal of Medical Case Reports
Association Between Bacteremia from Specific Microbes and Subsequent Diagnosis of Colorectal Cancer – TNY Kwong – Gastroenterology
Animal experiments
Tributyltin exposure induces gut microbiome dysbiosis with increased body weight gain and dyslipidemia in mice – H Guo – Environmental Toxicology and Pharmacology
Inhibition Effect of Glycyrrhiza Polysaccharide (GCP) on Tumor Growth through Regulation of the Gut Microbiota Composition – X Zhang – Journal of Pharmacological Sciences
Ketogenic diet enhances neurovascular function with altered gut microbiome in young healthy mice – D Ma – Scientific Reports
Preprint: Efficacy of fecal sampling as a gut proxy in the study of chicken gut microbiota – W Yan – bioRxiv
Acute exposure to PBDEs at an environmentally realistic concentration causes abrupt changes in the gut microbiota and host health of zebrafish – L Chen – Environmental Pollution
Animal microbiome
Integrated metatranscriptomics and metaproteomics for the characterization of bacterial microbiota in unfed Ixodes ricinus – A Hernández-Jarguín – Ticks and Tick-borne Diseases
Metatranscriptome analysis of the intestinal microorganisms in Pardosa pseudoannulata in response to cadmium stress – H Yang – Ecotoxicology and Environmental Safety
Plant, root, and soil microbiome
Beneficial associations between Brassicaceae plants and fungal endophytes under nutrient-limiting conditions: evolutionary origins and host–symbiont molecular mechanisms – K Hiruma – Current Opinion in Plant Biology
Cross-kingdom lipid transfer in arbuscular mycorrhiza symbiosis and beyond – A Keymer – Current Opinion in Plant Biology
Isolation of local Bacillus spp. from Afghanistan soils and their potential in suppressing the root-knot nematodes on tomato – AS Jamily – J-Stage
Effect of community-based soil and water conservation practices on arbuscular mycorrhizal fungi types, spore densities, root colonization, and soil nutrients in the northern highlands of Ethiopia – M Welemariam – Chemical and Biological Technologies in Agriculture
Biocontrol mechanisms of Bacillus sp., isolated from tomato rhizosphere, against Fusarium oxysporum f. sp. lycopersici – M Jangir – Biological Control
Root Exudates Dominate the Colonization of Pathogen and Plant Growth-Promoting Rhizobacteria – J Yuan – Root Biology
Unfolding the Role of Rhizomicrobiome Toward Sustainable Agriculture – S Kaul – Root Biology
Sugars en route to the roots. Transport, metabolism and storage within plant roots and towards microorganisms of the rhizosphere – N Hennion – Physiologia Plantarum
Salt marsh sediment bacterial communities maintain original population structure after transplantation across a latitudinal gradient – A Angermeyer – PeerJ
Impact of slope exposure on chemical and microbiological properties of Norway spruce deadwood and underlying soil during early stages of decomposition in the Italian Alps – T Bardelli – CATENA
Built environment
A comparative study of eubacterial communities by PCR-DGGE fingerprints in anoxic and aerobic biotrickling filters used for biogas desulfurization – A Valle – Bioprocess and Biosystems Engineering
Food microbiology
Microbial community dynamics of Dan’er barley grain during the industrial malting process – X Li – Food Microbiology
Physicochemical, microbiological and sensory acceptance alterations of strawberries caused by gamma radiation and storage time – M de Jesus Filho – Scientia Horticulturae
Evaluation of critical points of mould growth and mycotoxin production in the stored barley ecosystem with a hazardous initial microbiological state of grain – J Wawrzyniak – Journal of Stored Products Research
Viruses and phages
Thesis: Virology By The Numbers: A Quantitative Exploration of Viral Energetics, Genomics, and Ecology – G Mahmoudabadi – Caltech THESIS
Techniques
Microbiology: making the best of PCR bias – M Eisenstein – Nature
Anton Chekhov and Robert Koch Cheek to Cheek: A Proteomic Study – A D’Amato – Proteomics
Microbes in the news
Future of Microbiome Drugs Market including key players Pfizer, Second Genome, Seres Therapeutics – Technical Progress News
Pattern hair loss could be due to gut bacteria – Science Nordic
Legionella bacteria has been detected at the problem-plagued Perth Children’s Hospital. – SBS News
Connections Between Art And Science Explored – The Enterprise
Non-microbiology picks
Arctic ice carries heavy freight of plastic – Nature
Brazil’s lawmakers renew push to weaken environmental rules – Nature
Feeling overwhelmed by academia? You are not alone – Nature
Real-world illness requires medical multitasking – Nature
Announcement: stem-cell policy – Nature