Human microbiome digest, June 2, 2014

Roberto Romero and Jacques Ravel report on the vaginal microbiome in the setting of term and preterm deliveries, red wine might be good for your teeth, and secretory IgA and gut microbiota influence each other.

Pregnancy and birth

Gut microbiome

Respiratory microbiome

Oral microbiome

Skin microbiome

  • Screen Shot 2014-06-02 at 2.35.33 PMNot sure if I would pay $36 for this review, but here it is: Cutaneous microbiome studies in the times of affordable sequencing – Marjana Tomic-Canic – Journal of Dermatological Science –  “We now know that four phyla, Actinobacteria, Firmicytes, Proteobacteria and Bacteroidetes, constitute preponderance of skin bacteria, while Malassezia dominates the fungal microbiome. “

More human microbiome

Metabolomics

Animal models of gut microbiome

Microbiome in the news

  • Screen Shot 2014-06-02 at 3.08.55 PMOur bodies, our bugs, and learning to love the bacteria that live inside us – Jane Macdougall – National Post – “Eating yogurt instead of taking a pill might sound crazy, but it’s worth considering why that is”
  • Blaser QA TK TK – Carl Zimmer – Wired.com – “Microbiologist Martin Blaser of New York University School of Medicine says that many species of germs are disappearing from our bodies—and that’s a problem.”
  • This appear to be a highly biased study: Experts warn over bad bacteria count – Taiwanese children compare poorly with their Asian peers in good and bad bacteria count, which could make them more susceptible to diseases – Wei Yi-chia and Jason Pan – Taipei Times – “The study, released on Thursday by the Association for Lactic Acid Bacteria (TALAB), found that Taiwanese schoolchildren have up to 30 times more Escherichia coli and 15 times more Clostridium perfringens — two of the “bad” bacteria — than kids of the same age in Japan.”
  • Shampoo and Soap Wreak Havoc on the Skin’s Microbiome Say Researchers – Donna Westlund – Guardian Libery Voice

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Digest May 23, 2014

Today’s digest features showering with bacteria instead of soap, bacteria on the Mars rover, phages and bacteria reading through stop-codons, and a meteor shower tonight. What do meteor showers have to do with microbiome papers, you ask? Well, nothing. They are just cool to watch. So put on that fleece, get yourself to a dark place outside, and look North. Or stay inside and read today’s new digest.

General microbiome papers

Human oral microbiome papers

Human gut microbiome papers

Human genital microbiome papers

Pregnancy and birth papers

Metagenomics

Chromosomal organization

Antibiotics and resistance papers

Pathogenicity papers

Phages and viruses

Microbes in space

More Microbes

Bacteria in the news

Dr. Bik’s Picks

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Digest May 22, 2014

Today’s digest features armpits, helminths and fish probiotics.

Skin microbiome papers

Gut microbiome papers

Pregnancy and birth microbiome papers

Animal microbiome papers

General microbiome papers

Dengue papers

Arsenic metabolism papers

Science, Ethics and Misconduct

Dr. Bik’s Picks

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Digest May 21, 2014

The first digest on this website features the microbiomes of saliva, placenta, and planes. Enjoy!

Oral microbiome papers

Gut microbiome papers

Pregnancy and birth microbiome papers

Respiratory microbiome  papers

Environmental microbiome papers

Dr. Bik’s Picks