Monthly Archives: May 2022

May 04, 2022

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Human gut microbiome

Associations between self-reported psychological symptom severity and gut microbiota: further support for the microgenderome – Ganci et al. – BMC Psychiatry

Impacts of dietary exposure to pesticides on faecal microbiome metabolism in adult twins – Mesnage – Environmental Health

Diversity and Metabolic Potential of the Gut Microbiome in Adolescents with Functional Bowel Disorder – Klimenko et al. – Bulletin of Experimental Biology and Medicine

[REVIEW]Diet-microbiome interactions in cancer treatment: Opportunities and challenges for precision nutrition in cancer – Greathouse et al. – Neoplasia

Fermented brown rice beverage distinctively modulates the gut microbiota in Okinawans with metabolic syndrome: A randomized controlled trial – Akamine et al. – Nutrition Research

Gut Microbiome Characteristics in Mothers and Infants According to the Presence of Atopic Dermatitis – Sung et al. – BioMed Research International

Animal experiments (mouse/rat experiments, chickens/pigs on different diets)

Fecal microbiota transfer between young and aged mice reverses hallmarks of the aging gut, eye, and brain – Parker – Microbiome

Bacteria and Bellicosity: Photoperiodic Shifts in Gut Microbiota Drive Seasonal Aggressive Behavior in Male Siberian Hamsters – Shor, Brown & Freeman – Journal of Biological Rhythms

Microbial DNA enrichment promotes liver steatosis and fibrosis in the course of non-alcoholic steatohepatitis – Luo et al. – Acta Physiologica

[PREPRINT]High fat diet changes bacterial signatures in the murine pancreas – Scheithauer et al. – bioRxiv

Animal microbiome (for animals in the wild)

Geographical resistome profiling in the honeybee microbiome reveals resistance gene transfer conferred by mobilizable plasmids – Sun et al. – Microbiome

Plant, root, and soil microbiome

Phytobeneficial traits of rhizobacteria under the control of multiple molecular dialogues – Laveilhé – Microbial Biotechnology

Bioinformatics

[PREPRINT]Modeling complex measurement error in microbiome experiments – Clausen & Willis – arXiv

Techniques

[PREPRINT]You will know by its tail: a method for quantification of heterogeneity of bacterial populations using single cell MIC profiling – Pacocha et al. – bioRxiv

May 3, 2022

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General microbiome

Longitudinal multi-omics analyses link gut microbiome dysbiosis with recurrent urinary tract infections in women – Worby et al. Nature Microbiology. 2022

Human gut microbiome

Unfavourable intrauterine environment contributes to abnormal gut microbiome and metabolome in twins – Yang et al. Gut

Dosing a synbiotic of human milk oligosaccharides and B. infantis leads to reversible engraftment in healthy adult microbiomes without antibiotics – Button et al. Cell Host & Microbe

Gut microbial similarity in twins is driven by shared environment and aging – Vilchez-Vargas et al. eBioMedicine

Gut Microbiome Alterations Associated with Diabetes in Mexican Americans in South Texas. Kwan et al. mSystems

Human respiratory & oral microbiome

Metagenomic sequencing reveals time, host, and body compartment-specific viral dynamics after lung transplantation – Widder et al. Microbiome

Polymicrobial Interactions of Oral Microbiota: a Historical Review and Current Perspective – Zhang et al. mBio

Animal experiments

Effects of ‘Healthy’ Fecal Microbiota Transplantation against the Deterioration of Depression in Fawn-Hooded Rats – Hu et al. mSystems

Water/Extremophile microbiome

Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans – Duncan et al. Microbiome

Bioinformatics

Compositionally Aware Phylogenetic Beta-Diversity Measures Better Resolve Microbiomes Associated with Phenotype – Martino et al. mSystems

BiomeHorizon: Visualizing Microbiome Time Series Data in R – Fink et al. mSystems

Comparative Analysis and Data Provenance for 1,113 Bacterial Genome Assemblies. Yarmosh et al. mSphere

Non microbiome picks

Ancestry-inclusive dog genomics challenges popular breed stereotypes – Morrill et al. Science. 

Dietary fibre in hypertension and cardiovascular disease management: systematic review and meta-analyses – Reynolds et al. BMC Medicine