Highlights: Today’s digest has articles on microbes associated with infants, vagina, gut, water and many more.
Events and jobs
Postdoctoral Researcher in mathematical modelling of the impact of host restriction on the transmission of bacteria – Amsterdam – Closing date: February 28, 2019
Pregnancy and early life
A role for the microbiome in mother–infant interaction and perinatal depression – Amanda Sanders – The International Review of Psychiatry
Multi-site human microbiome
Surgical site infections and the microbiome: An updated perspective – Richard P. Wenzel – Infection Control & Hospital Epidemiology
Human vaginal microbiome
The Endobiota Study: Comparison of Vaginal, Cervical and Gut Microbiota Between Women with Stage 3/4 Endometriosis and Healthy Controls – Baris Ata – Scientific Reports
Relationship between the Cervical Microbiome, HIV Status, and Precancerous Lesions – Cameron Klein – mBio
Human nearly-sterile sites
Microbiome-based body fluid identification of samples exposed to indoor conditions – Akos Dobay – FSI Genetics
Human gut microbiome
Arabinoxylan oligosaccharides and polyunsaturated fatty acid effects on gut microbiota and metabolic markers in overweight individuals with signs of metabolic syndrome: a randomized cross-over trial – Louise Kjølbæk – Clinical Nutrition
The human microbiota and infection prevention – R. Araos – Infection Control & Hospital Epidemiology
Gut pathobionts as triggers for liver diseases – Peter Fickert – Nature Microbiology
Man and the Microbiome: A New Theory of Everything? – Mary I. Butler – Annual Review of Clinical Psychology
Is it true that gut microbiota is considered as panacea in cancer therapy? – Amir Salek Farrokhi – Journal of Cellular Physiology
Composition of gut microbiota in patients with toxigenic Clostridioides (Clostridium) difficile: Comparison between subgroups according to clinical criteria and toxin gene load – Sung-Hee Han – PLoS ONE
The Intestinal Microbiome, Plasma Metabolome and Liver Transcriptome‐ A Conspiracy Driving Hepatic Steatosis – Wajahat Z Mehal – Hepatology
A possible link between polyunsaturated fatty acids and uremic toxins from the gut microbiota in hemodialysis patients: A hypothesis – Julie Ann Kemp – Hemodialysis International
Animal experiments
Alterations of the mice gut microbiome via Schistosoma japonicum ova-induced granuloma – Yanqing Zhao – Frontiers in Microbiology
The functional repertoire encoded within the native microbiome of the model nematode Caenorhabditis elegans – Johannes Zimmermann – bioRxiv
Helminth-Based Product and the Microbiome of Mice with Lupus – Hadar Neuman – mSystems
Gut microbiota regulates lacteal integrity by inducing VEGF-C in intestinal villus macrophages. – SH Suh – EMBO Reports
Animal microbiome
Gut Microbiome Analysis In Adult Tropical Gars (Atractosteus tropicus) – Roberto Mendez-Perez – bioRxiv
Moderate plant water stress improves larval development, and impacts immunity and gut microbiota of a specialist herbivore – Elena Rosa -PLoS ONE
Plant, root, and soil microbiome
Chinese white truffles shape the ectomycorrhizal microbial communities of Corylus avellana –
Narrow safety margin in the phyllosphere during thermal extremes – Sylvain Pincebourde – PNAS
Nitrogen- and phosphorus-starved Triticum aestivum show distinct belowground microbiome profiles – Antoine P. Pagé – PLoS ONE
Water and extremophile microbiome
Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California – Sabah Ul-Hasan – PLoS ONE
Editorial: Thermophilic and Halophilic Extremophiles in Eurasian Environments – Hongchen Jiang – Frontiers in Microbiology
Marine deep biosphere microbial communities assemble in near-surface sediments in Aarhus Bay – Caitlin Petro – bioRxiv
Quantifying population-specific growth in benthic bacterial communities under low oxygen using H218O – Ömer K. Coskun – The ISME Journal
Bacterial community pattern along the sediment seafloor of the Arctic fjorden (Kongsfjorden, Svalbard) – Antonie van Leeuwenhoek
Sources and selection of snow-specific microbial communities in a Greenlandic sea ice snow cover – Lorrie Maccario – Scientific Reports
Bacterial community composition shaped by water chemistry and geographic distance in an anthropogenically disturbed river – Peng Wang – Science of The Total Environment
Built environment
Cell factories converting lactate and acetate to butyrate: Clostridium butyricum and microbial communities from dark fermentation bioreactors – Anna Detman – Microbial Cell Factories
Phages and viruses
Discovery of several thousand highly diverse circular DNA viruses – Michael J Tisza – bioRxiv
Techniques
Spatial metabolomics of in situ, host-microbe interactions – Benedikt K Geier – bioRxiv
Performance of Microbiome Sequence Inference Methods in Environments with Varying Biomass – Vincent Caruso – mSystems