July 21, 2018

Have a good weekend! Today we have a very interesting list of reviews about different aspects of the microbiome. We have also: the effects of edible crickets on microbiota, steatosis in mice induced by obese human microbiota, the effect of probiotics on patients with fibromyalgia, food chemicals and human microbiota and more…  

 

Human and General Microbiome

Review: Host-Gut Microbiota Crosstalk in Intestinal Adaptation – Justine Marchix – CMGH

Review: The Brain-Gut-Microbiome Axis – Clair R. Martin – CMGH

Brief Report: A Gut Feeling: A Hypothesis of the Role of the Microbiome in Attention-Deficit/Hyperactivity Disorders – Xue Ming – Child Neurology Open

Preview: Intestinal Tolerance, with a Little Help from Our Microbial Friends – Hélène Descamps – Immunity

Review: Re-framing the theory of autoimmunity in the era of the microbiome: persistent pathogens, autoantibodies, and molecular mimicry – Amy D Proal – Discovery Medicine

Review: The gut microbiota in neuropsychiatric disorders – Marta Grochowska – Acta Neurobiologiciae Expermentalis

Review: Gut Microbiota and Mucosal Immunity in the Neonate – Majda Dzidic – Medical Sciences

Food Chemicals Disrupt Human Gut Microbiota Activity And Impact Intestinal Homeostasis As Revealed By In Vitro Systems – Clémence Defois – Scientific Reports

Research Highlight: Delivery of the gut microbiome – Ashley York – Nature Reviews Microbiology

Review: Microbiota-Host Crosstalk: A Bridge Between Cardiovascular Risk Factors, Diet, and Cardiovascular Disease – Jacques Amar – American Journal of Hypertension

Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease – Xu Zhang – Nature Communications

 

Animal Microbiome / Animal Experiments

Non-canonicaly recruited TCRαβCD8αα IELs recognize microbial antigens – Lukasz Wojciech – Scientific Reports

Bilophila wadsworthia aggravates high fat diet induced metabolic dysfunctions in mice – Jane M. Natividad – Nature Communications

Beneficial Impact and Molecular Mechanism of Bacillus coagulans on Piglets’ Intestine – Tao Wu – International Journal of Molecular Sciences

Collaborating genomic, transcriptomic and microbiomic alterations lead to canine extreme intestinal polyposis – Jin Wang – Oncotarget

Effects of Intravenous Infusion With Sodium Butyrate on Colonic Microbiota, Intestinal Development- and Mucosal Immune-Related Gene Expression in Normal Growing Pigs – Xue Chen – Frontiers in Microbiology

Microbiome Composition in Both Wild-Type and Disease Model Mice Is Heavily Influenced by Mouse Facility – Kristopher D. Parker – Frontiers in Microbiology

Genetically Obese Human Gut Microbiota Induces Liver Steatosis in Germ-Free Mice Fed on Normal Diet – Ruirui Wang  – Frontiers in Microbiology

Microbial Community Composition Reveals Spatial Variation and Distinctive Core Microbiome of the Weaver Ant Oecophylla smaragdina in Malaysia – Kah-Ooi Chua – Scientific Reports

Antibiotic-induced microbiome depletion alters metabolic homeostasis by affecting gut signaling and colonic metabolism – Amir Zarrinpar –  Nature Communications

 

Food Microbiome

Analysis of microbiota on lettuce (Lactuca sativa) cultivated in South Korea to identify foodborne pathogens – Yeon-Cheol – Journal of Microbiology and Biotechnology

Impact of chlorine dioxide disinfection of irrigation water on the epiphytic bacterial community of baby spinach and underlying soil – Pilar Truchado – PLoS One

 

Beneficial Microbes and Compounds

Perspective: Green and black tea phenolics – Bioavailability, transformation by colonic microbiota, and modulation of colonic microbiota – Zhibin Liu – Journal of Agricultural and Food Chemistry

Therapeutic effects of probiotics on neurotoxicity induced by clindamycin and propionic acid in juvenile hamsters – Nora Al-Orf – Metabolic Brain Disease

Impact of Edible Cricket Consumption on Gut Microbiota in Healthy Adults, a Double-blind, Randomized Crossover Trial – Valerie J. Stull – Scientific Reports

Nisin, a potent bacteriocin and anti-bacterial peptide, attenuates expression of metastatic genes in colorectal cancer cell lines – Zohreh Norouzi – Microbial Pathogenesis

A Pilot Randomized Controlled Trial to Explore Cognitive and Emotional Effects of Probiotics in Fibromyalgia – Pablo Roman – Scientific Reports

Fiber Supplements Derived From Sugarcane Stem, Wheat Dextrin and Psyllium Husk Have Different In Vitro Effects on the Human Gut Microbiota – Hasinika K. A. H. Gamage –  Frontiers in Microbiology

 

Environmental Microbiology

Effects of Pseudomonas chenduensis and biochar on cadmium availability and microbial community in the paddy soil – Lingjuan Li – Science of The Total Environment

Breeding for soil-borne pathogen resistance impacts active rhizosphere microbiome of common bean – Lucas William Mendes – The ISME Journal

 

Pathogen Research

Exopolysaccharide protects Vibrio cholerae from exogenous attacks by the type 6 secretion system – Jonida Toska – PNAS

The Synergistic Effect of Exogenous Glutamine and Rifampicin Against Mycobacterium Persisters – Xue Huang – Frontiers in Microbiology

 

Bioinformatics

Preprint: MetaMaps – Strain-level metagenomic assignment and compositional estimation for long reads – Alexander Dilthey – BioRxiv

 

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