Have a good Wednesday! Today, we have an interesting set of papers about the effect of different compounds on microbiota, as well the effect of some probiotics. We have also a paper about the use binding of immunoglobulin A by gut microbiota commensals as a potential mechanism for stabilization; we have also papers about virome from urinary and female reproductive tracts, a study a multi-site study of maternal microbiota.
Gut and General Microbiome
Introduction: The host-associated microbiome: Pattern, process and function – Laura Wegener Parfrey – Molecular Ecology (Special Issue: The host-associated microbiome: Pattern, process and function)
Gut microbiota utilize immunoglobulin A for mucosal colonization – G. P. Donaldson – Science
Low Maternal Microbiota Sharing across Gut, Breast Milk and Vagina, as Revealed by 16S rRNA Gene and Reduced Metagenomic Sequencing – Ekaterina Avershina – Genes
Editorial: Bacteria in the ageing gut: Did the taming of fire promote a long human lifespan? – Antoine Danchin – Environmental Microbiology
Commentary: Insights into the role of gut microbiota in obesity: pathogenesis, mechanisms, and therapeutic perspectives – Lijuan Sun – Protein & Cell
Review: Gut microbiota derived metabolites in cardiovascular health and disease – Zeneng Wang – Protein & Cell
Treating Clostridium difficile infections: Should fecal microbiota transplantation be reclassified from investigational drug to human tissue? – Mark Stuntz – Contemporary Clinical Trials Communications
Effects of intestinal colonization by Clostridium difficile and Staphylococcus aureus on microbiota diversity in healthy individuals in China – Danfeng Dong – BMC Infectious Diseases
BaiCD gene cluster abundance is negatively correlated with Clostridium difficile infection – Philipp Solbach – PLoS ONE
Microbiome Responses to an Uncontrolled Short-Term Diet Intervention in the Frame of the Citizen Science Project – Natalia S. Klimenko – Nutrients
Respiratory Tract Microbiome
Relation between lower respiratory tract microbiota and type of immune response against tuberculosis – Maede Nakhaee – Microbial Pathogenesis
Microbiome characteristics of induced sputum compared to bronchial fluid and upper airway samples – Shi‐qi An – Pediatric Pulmonology
The association between inflammation, the microbiome and urethane-induced pulmonary adenocarcinoma – Zenghua Deng – Oncology Letters
Urinary/Reproductive Tract Microbiome
Urinary Virome Perturbations in Kidney Transplantation – Tara K. Sigdel – Frontiers in Medicine
The Vaginal Eukaryotic DNA Virome and Preterm Birth – Kristine M. Wylie – American Journal of Obstetrics and Gynecology
Beneficial Microbes and Compounds
Walnut Consumption Alters the Gastrointestinal Microbiota, Microbially Derived Secondary Bile Acids, and Health Markers in Healthy Adults: A Randomized Controlled Trial – Hannah D Holscher – The Journal of Nutrition
The effect of vitamin D on intestinal inflammation and faecal microbiota in patients with ulcerative colitis – Mayur Garg – Journal of Crohn’s and Colitis
Exopolysaccharide from Bifidobacterium longum subsp. longum 35624™ modulates murine allergic airway responses – E. Schiavi – Beneficial Microbes
Modulatory effect of three probiotic strains on infants’ gut microbial composition and immunological parameters on a placebo-controlled, double-blind, randomised study – J. De Andrés – Beneficial Microbes
Review: Role of Lactobacillus reuteri in Human Health and Diseases – Qinghui Mu – Frontiers in Microbiology
Intake of phytic acid and myo-inositol lowers hepatic lipogenic gene expression and modulates gut microbiota in rats fed a high-sucrose diet – Yukako Okazaki – Biomedical Reports
Animal Microbiome
Feminizing Wolbachia influence microbiota composition in the terrestrial isopod Armadillidium vulgare – Jessica Dittmer – Scientific Reports
Gut microbiomes of wild great apes fluctuate seasonally in response to diet – Allison L. Hicks – Nature Communications
Endophytic Fungi in Species of Artemisia – Andreea Cosoveanu – Journal of Fungi
Tributyltin exposure induces gut microbiome dysbiosis with increased body weight gain and dyslipidemia in mice – Hao Guo – Environmental Toxicology and Pharmacology
Food Microbiome
Unravelling the contribution of lactic acid bacteria and acetic acid bacteria to cocoa fermentation using inoculated organisms – Van Thi Thuy Ho – International Journal of Food Microbiology
Validation of standard method EN ISO 22964:2017 – Microbiology of the food chain – Horizontal method for the detection of Cronobacter spp – Amparo de Benito – International Journal of Food Microbiology
Plant and Soil Microbiome
Mycobiome analysis of asymptomatic and symptomatic Norway spruce trees naturally infected by the conifer pathogens Heterobasidion spp. – Andriy Kovalchuk – Environmental Microbiology Reports
Perspective: Core microbiomes for sustainable agroecosystems – Hirokazu Toju – Nature Plants
Meetings: Holobiont: a conceptual framework to explore the eco-evolutionary and functional implications of host-microbiota interactions in all ecosystems – Denis Faure – New Phytologist
Other
Marker microbiome clusters are determined by operational parameters and specific key taxa combinations in anaerobic digestion – Susanne Theuerl – Bioresource Technology