This Monday, read about the precision of microbiome wording, cryopreservation of the human gut microbiota, water infrastructure microbiomes, and more. Happy reading!
General microbiome
Determining Microbial Roles in Ecosystem Function: Redefining Microbial Food Webs and Transcending Kingdom Barriers – Kim M. Handley – mSystems
Digitalizing the Microbiome for Human Health – Kirti Nath and Christoph A. Thaiss – mSystems
New Approaches to Microbiome-Based Therapies – Andrea C. Wong and Maayan Levy – mSystems
Benefits and Costs of Animal Virulence for Microbes – Arturo Casadevall and Liise-anne Pirofski – mSystems
*Language, numeracy and logic in microbiome science – Fergus Shanahan and Colin Hill – Nature Reviews Gastroenterology & Hepatology
Gut microbiome
*Cryopreservation of the human gut microbiota: current state and perspectives – Daria V.Smirnovaa – International Journal of Medical Microbiology
Metaproteomics of the human gut microbiota: challenges and contributions to other OMICS – Ngom Issa Isaac – Clinical Mass Spectrometry
Mapping human microbiome drug metabolism by gut bacteria and their genes – Michael Zimmermann – Nature
MinION Sequencing of colorectal cancer tumour microbiomes – a comparison with amplicon-based and RNA-Sequencing – William S Taylor – bioRxiv
Assessment of Causal Direction Between Gut Microbiota-Dependent Metabolites and Cardiometabolic Health: Abi-Directional Mendelian Randomisation Analysis – Jinzhu Jia – Diabetes
Metagenomic and metabolomic analyses reveal distinct stage-specific phenotypes of the gut microbiota in colorectal cancer – Shinichi Yachida – Nature Medicine
Dysbiosis of gut microbiota in a selected population of Parkinson’s patients – Daniele Pietrucci – Parkinsonism & Related Disorders
Animal experiment
Heterochronic faecal transplantation boosts gut germinal centres in aged mice – Marisa Stebegg – Nature communications
High fat diet alters gut microbiota but not spatial working memory in early middle-aged Sprague Dawley rats – Nikita Girish Deshpande – PlosOne
Animal microbiome
Fibre digestion by rumen microbiota – a review of recent metagenomic and metatranscriptomic studies – Stephanie A Terry – Canadian Journal of Animal Science
Correlation between Disease Severity and the Intestinal Microbiome in Mycobacterium tuberculosis-Infected Rhesus Macaques – Sivaranjani Namasivayam – mBio
Water microbiome
*Integrating biotechnology and microbial ecology in urban water infrastructure through a microbiome continuum viewpoint – Lutgarde Raskin and Per Halkjær Nielsen – Current Opinion in Biotechnology
Techniques
MOBN: an interactive database of multi-omics biological networks – Cheng Zhang – bioRxiv