Have a good Thursday! Today, in Microbiome Digest: studies about Bacterial Vaginosis, dysbiosis associated with Hepatitis C infection, oral microbiome and oral cancer, microbiome reestablishment after cleaning, detection of microbes in culture-negative intra-amniotic infections and more…
Human Microbiome and General
A Prospective Metagenomic and Metabolomic Analysis of the Impact of Exercise and/or Whey Protein Supplementation on the Gut Microbiome of Sedentary Adults – Owen Cronin – mSystems
Review: Relationship between diet, the gut microbiota, and brain function – Anouk C Tengeler – Nutrition Reviews
Identification of Key Bacteria Involved in the Induction of Incident Bacterial Vaginosis: A Prospective Study – Christina A Muzny – The Journal of Infectious Diseases
Gut Dysbiosis Associated With Hepatitis C Virus Infection – Takako Inoue – Clinical Infectious Diseases
Research Highlight: Fibre aids fight against nasty gut infection – Nature
Review: The Intestinal Epithelium: Central Coordinator of Mucosal Immunity – Joannie M. Allaire – Trends in Immunology
Humans as holobionts: implications for prevention and therapy -Maarten van de Guchte – Microbiome
Obese Subjects With Specific Gustatory Papillae Microbiota and Salivary Cues Display an Impairment to Sense Lipids – Philippe Besnard – Scientific Reports
Bacterial culture-negative subclinical intra-amniotic infection can be detected by bacterial 16S ribosomal DNA-amplifying polymerase chain reaction – Sachi Morimoto – Japanese Journal of Infectious Diseases
Impact of HIV and Type 2 diabetes on Gut Microbiota Diversity, Tryptophan Catabolism and Endothelial Dysfunction – Hedda Hoel – Scientific Reports
New Horizons in Obstructive Lung Disease. Microbiome Dynamics, Pulmonary Artery Enlargement, and Endobronchial Valves – Pujan H. Patel – American Journal of Respiratory and Critical Care Medicine
Oral Microbiota Community Dynamics Associated With Oral Squamous Cell Carcinoma Staging – Chia-Yu Yang – Frontiers in Microbiology
Bifidobacterium longum subsp infantis CECT7210-supplemented formula reduces diarrhea in healthy infants: a randomized controlled trial – Joaquin Escribano – Pediatric Research
Animal Microbiome
Transplantation of human microbiota into conventional mice durably reshapes the gut microbiota – Laura Wrzosek – Scientific Reports
Restructuring of the Gut Microbiome by Intermittent Fasting Prevents Retinopathy and Prolongs Survival in db/db Mice – Eleni Beli – Diabetes
Effects of shenling baizhu powder herbal formula on intestinal microbiota in high-fat diet-induced NAFLD rats – Yupei Zhang – Biomedicine & Pharmacotherapy
The effects of sewage treatment plant effluents on hepatic and intestinal biomarkers in common carp (Cyprinus carpio) – Sidika Sakalli – Science of The Total Environment
Feminizing Wolbachia influence microbiota composition in the terrestrial isopod Armadillidium vulgare – Jessica Dittmer – Scientific Reports
Preprint: Intestinal microbiota of whitefish (Coregonus sp.) species pairs and their hybrids in natural and controlled environment – Maelle Sevellec – bioRxiv
Gut microbiomes of wild great apes fluctuate seasonally in response to diet – Allison L. Hicks – Nature Communications
Dietary polyphenols enhance optogenetic recall of fear memory in hippocampal dentate gyrus granule neuron subpopulations – Chad Smith – Communications Biology
Built Environments
The Reestablishment of Microbial Communities after Surface Cleaning in Schools – Sarah E. Kwan – Journal of Applied Microbiology
Bioinformatics and Genomics
SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control – Gabriel A. Al-Ghalith – mSystems
Phylogenetic Placement of Exact Amplicon Sequences Improves Associations with Clinical Information – Stefan Janssen – mSystems
Identifying Group-Specific Sequences for Microbial Communities Using Long k-mer Sequence Signatures – Ying Wang – Frontiers in Microbiology
Plant/Soil Microbiomes
The role of bacteria in pine wilt disease: insights from microbiome analysis – Marta Alves – FEMS Microbiology Ecology
Other (Microbiome-related)
Review: Food Intake and Eating Behavior After Bariatric Surgery – Werd Al-Najim – Physiological Reviews
Review: Microfluidic Organ-on-a-Chip Models of Human Intestine – Amir Bein – Cellular and Molecular Gastroenterology and Hepatology
Preprint: CRISPR-Cas blocks antibiotic resistance plasmid transfer between Enterococcus faecalis strains in the gastrointestinal tract – Valerie J Price – bioRxiv