June 4, 2017

Some exciting papers in the sections- General microbiome & Microbes in news, to get you through Sunday!

General microbiome

The 5D Framework: A Clinical Primer for Fecal Microbiota Transplantation to Treat Clostridium difficile infection – JR Allegretti – Gastrointestinal Endoscopy

Abatement of AO7 in a divided microbial fuel cells by sequential cathodic and anodic treatment powered by different microorganisms – G Riccobono – Journal of Electroanalytical Chemistry

THE MICROBIOME AND TRANSFUSION IN CANCER PATIENTS – H Goubran – Transfusion and Apheresis Science

« Olsenella congonensis» sp.nov., identified in human stool sample – M Bilen – New Microbes and New Infections

Description of “Blautia phocaeensis” sp.nov., and “Lachnoclostridium edouardi” sp. nov., isolated from healthy fresh stools of Saudii Arabia bedouins by culturomics – SI Traore  – New Microbes and New Infections

Sulfur-driven iron reduction coupled to anaerobic ammonium oxidation – P Bao – Environmental Science and Technology


Animal microbiome

Diversity and composition of cultivable gut bacteria in an endemic island bird and its mainland sister species – E Lobato – Symbiosis

Modulation of ruminal fermentation profile and microbial abundance in cows fed diets treated with lactic acid, without or with inorganic phosphorus supplementation – E Mickdam – Animal Feed Science and Technology

A pea (Pisum sativum L.) seed albumin extract prevents colonic DSS induced dysbiosis in mice – I Aranda-Olmedo – Journal of Functional Foods


Human respiratory microbiome

The Respiratory Microbiome: Beyond the Culture – E Monsó – Archivos de Bronconeumología

WS03.7 Coexistence of prey and predator bacteria in cystic fibrosis lung microbiota – J. de Dios-Caballero – Journal of Cystic Fibrosis


Human gut microbiome

The gut bacterium and pathobiont Bacteroides vulgatus activates NF-κB in a human gut epithelial cell line in a strain and growth phase dependent manner – P Ó Cuív – Anaerobe

Chlorogenic acid versus amaranth’s caffeoylisocitric acid – Gut microbial degradation of caffeic acid derivatives – M Vollmer – Food Research International

Consumption effect of a synbiotic beverage made from soy and yacon extracts containing Bifidobacterium animalis ssp. lactis BB-12 on the intestinal polyamine concentrations in elderly individuals – MSJ Manzoni – Food Research International

Review: Effect of diet and gut environment on the gastrointestinal formation of N-nitroso compounds: A review – J Kobayashi – Nitric Oxide

Atopic dermatitis and food sensitization in South African toddlers : Role of fiber and gut microbiota – M Mahdavinia – Annals of Allergy, Asthma & Immunology


Plant, root and soil microbiome

Significant Impacts of Increasing Aridity on the Arid Soil Microbiome – JW Neilson – mSystems

Consequences of tropical forest conversion to oil palm on soil bacterial community and network structure – SA Wood – Soil Biology and Biochemistry

The response of archaeal species to seasonal variables in a subtropical aerated soil: insight into the low abundant methanogens – W Xie – Applied Microbiology and Biotechnology

Relative roles of competition, environmental selection and spatial processes in structuring soil bacterial communities in the Qinghai-Tibetan Plateau – J Zhou – Applied Soil Ecology

Isolation and identification of endophytic bacteria with plant growth promoting and biocontrol potential from oak trees – F Tashi-Oshnoei – Forest Pathology

Illumina-Based Sequencing Analysis Directed Selection for Actinobacterial Probiotic Candidates for Banana Plants – X Du – Probiotics and Antimicrobial Proteins

The influence of land use intensity on the plant-associated microbiome of Dactylis glomerata L. – J Estendorfer – Frontiers in Plant Science


Water microbiome and extremophiles

An overlooked nitrogen loss linked to anaerobic ammonium oxidation in estuarine sediments in China – XR Yang – Journal of Soils and Sediments


Food microbiology

Evolution of microbiota during spontaneous and inoculated Tonda di Cagliari table olives fermentation and impact on sensory characteristics – R Comunian – LWT-Food Science and Technology

PCR-DGGE markers for qualitative profiling of microbiota in raw milk and ripened cheeses – B Nalepa – LWT-Food Science and Technology

Identification of enzymatic activities involved in agave fructan consumption by Bifidobacterium longum subsp. infantis ATCC 15697 – E Cuevas-Juárez – Journal of Functional Foods



Photodynamic Therapy With Methylene Blue for Skin Ulcers Infected With Pseudomonas aeruginosa and Fusarium spp – C Aspiroz – Actas Dermo-Sifiliográficas



Antibacterial efficacy of nisin, bacteriophage P100 and sodium lactate against Listeria monocytogenes in ready-to-eat sliced pork ham – ACL Figueiredo – Brazilian Journal of Microbiology


More microbes

Spore forming bacteria in beer: occurrence, diversity, presence of hop resistance genes and fate in alcohol-free and lager beers – ARG Munford – Food Control

Survey of pathogens in threatened wild red-tailed Amazon parrot (Amazona brasiliensis) nestlings in Rasa Island, Brazil – FF Vaz – Brazilian Journal of Microbiology

Species specific substrates and products choices of 4-O-acetyltransferase from Trichoderma brevicompactum – S Sharma – Enzyme and Microbial Technology

Review: The Goldilocks model of immune symbiosis with Mycobacteria and Candida colonizers – RT Robinson – Cytokine

Immunological and epidemiological factors affecting candidiasis in HIV patients beginning antiretroviral therapy in an Asian clinic – EAT Wulandari – Archives of Oral Biology

Diversity and Ecology of and Biomineralization by Magnetotactic Bacteria – W Lin – Environmental Microbiology Reports


Microbes in news

Man Dies After His Tattoo Gets Infected with Ocean Bacteria – R Rettner – Live Science

Accelerated breeding of mutant bacteria may choke space race – J Seidel – News Corp Australia Network

Microgravity Can Permanently Mutate Bacteria to Make Them Faster Breeders –  D Nield – Science Alert

Vaginal bacteria can inhibit sexual transmission of Zika virus – Healio

Bacteria levels subside, Spring Lake beach reopens – R Zimmer – App.com

Meet C. diff, the gross bacteria on the soles of your shoes – E Roberts – Today

The Microscopic World of Bacteria Comes to Life with Sculpture – CR  Fernández – Labiotech

New Microbiology Data Reinforce Activity of Paratek’s Omadacycline Against Pathogens of Importance in Respiratory, Skin and Urinary Tract Infections – Paratek – Nasdaq Globe News Wire

A Traumatic Experience Can Reshape Your Microbiome – S Neilson – Huffington Post

Zymo Research to Launch Three New Kits for Microbiome Research at ASM Microbe 2017 – Zymo Research Corp. – PR Newswire

The gut microbiota plays key role in diabetes treatment – N Marriott –  Drug Target Review

In a first, Human Microbiome Project Launched in Northeast India! – TNT News

Metformin joins forces with gut microbes to improve blood sugars, new study finds – C Bienvenu – Diabetes.co.uk



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