General microbiome
Recurrent antibiotic exposure may promote cancer formation – Another step in understanding the role of the human microbiota? – Ben Boursi – European Journal of Cancer
Pregnancy and birth microbiome
Clinical chorioamnionitis at term VI: acute chorioamnionitis and funisitis according to the presence or absence of microorganisms and inflammation in the amniotic cavity – Roberto Romero – Journal of Perinatal Medicine
Pregnancy-related changes in the maternal gut microbiota are dependent upon the mother’s periconceptional diet – Wajiha Gohir – Gut Microbes
Potential NICU Environmental Influences on the Neonate’s Microbiome: A Systematic Review – Hartz, Lacey E. – Advances in Neonatal Care
Human oral microbiome
Analysis of the Microbiota of Black Stain in the Primary Dentition – Yue Li – PLOS ONE
Human gut microbiome
Furry pets modulate gut microbiota composition in infants at risk for allergic disease –
Merja Nermes – The Journal of Allergy and Clinical Immunology
Gut microbiome in Chronic Kidney Disease – Maria R. Wing – Experimental Physiology
Editorial: Microbial growth dynamics and human disease – Julia A. Segre – Science
Animal microbiome
Review: Heterogeneity of the gut microbiome in mice: guidelines for optimizing experimental design – Debby Laukens – FEMS Microbiology Reviews
454 Pyrosequencing-based assessment of bacterial diversity and community structure in termite guts, mounds and surrounding soils – Huxley M. Makonde – Springer Plus
Fish: Study of the microbiome of the intestine of the Comephorus dybowski korotneff, 1904 – N. L. Bel’kova – Ecology
Plant, root, and soil microbiome
An analysis of Pseudomonas genomic diversity in take-all infected wheat fields reveals the lasting impact of wheat cultivars on the soil microbiota – T.H. Mauchline – Environmental Microbiology
Selection of biological indicators appropriate for European soil monitoring – D. Stone – Applied Soil Ecology
Effects of silver nanoparticles on soil microorganisms and maize biomass are linked in the rhizosphere – Wouter Sillen – Soil Biology and Biochemistry
Arbuscular mycorrhiza symbiosis in viticulture: a review – Sophie Trouvelot – Agronomy for Sustainable Development
Soil particle size fractions harbour distinct microbial communities and differ in potential for microbial mineralisation of organic pollutants – Michael Hemkemeyer – Soil Biology and Biochemistry
Differential responses of total and active soil microbial communities to long-term experimental N deposition – Zachary B. Freedman – Soil Biology and Biochemistry
Environmental changes affect the assembly of soil bacterial community primarily by mediating stochastic processes – Ximei Zhang – Global Change
Built environment microbiome
Thesis: The building science of office surfaces: implications for microbial community succession – Mahnaz Zare – University of Toronto
Microbial Ecology
Dynamics of an experimental microbial invasion – Francisco Acosta – PNAS
http://www.pnas.org/content/early/2015/08/27/1505204112.full.pdf
Bioinformatics
metaModules identifies key functional subnetworks in microbiome-related disease – Ali May – Bioinformatics
ISMapper: identifying transposase insertion sites in bacterial genomes from short read sequence data – Jane Hawkey – BMC Genomics
WiseScaffolder: an algorithm for the semi-automatic scaffolding of Next Generation Sequencing data – Gregory K. Farrant – BMC Bioinformatics
Inferring microbial interaction network from microbiome data using RMN algorithm
Kun-Nan Tsai – BMC Systems Biology
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