Today’s reading recommendation includes microbiome from sites with low anthropogenic impact, drinking water microbiome, and more.
If you have only a minute for reading then your must read is this amazing summary thread on how you should be careful with making assumptions ⬇️
See you at #MVIF next week!
Global resistome
Global trends in antimicrobial resistance on organic and conventional farms – Eldon Ager – bioRxiv
*Microbiome diversity: A barrier to the environmental spread of antimicrobial resistance? – Uli Klümper – bioRxiv
Mother-to-infant microbiome
Mother-to-infant microbiota transmission and infant microbiota development across multiple body sites – Debby Bogaert – Cell Host & Microbe
Human gut microbiome
The Local Tumor Microbiome Is Associated with Survival in Late-Stage Colorectal Cancer Patients – Justine W. Debelius – Microbiology Spectrum
Exploring Bifidobacterium species community and functional variations with human gut microbiome structure and health beyond infancy – Ruben Ladeira, Julien Tap, Muriel Derrien – Microbiome Research Reports
Water microbiome
The microbial dark matter and “wanted list” in worldwide wastewater treatment plants – Yulin Zhang – Microbiome
*Microbiome, resistome and mobilome of chlorine-free drinking water treatment systems – David Calderón-Franco – Water Research
Animal experiment
Probiotics of Lacticaseibacillus paracasei SD1 and Lacticaseibacillus rhamnosus SD11 attenuate inflammation and β-cell death in streptozotocin-induced type 1 diabetic mice – Jongdee Nopparat – PlosOne
Antibiotic treatment using amoxicillin-clavulanic acid impairs gut mycobiota development through modification of the bacterial ecosystem – Madeleine Spatz – Microbiome
*Experimental Factors Influence Diversity Metrics of the Gut Microbiome in Laboratory Mice – Rikeish R. Muralitharan – bioRxiv
Virome & phages
Expanding known viral diversity in the healthy infant gut – Shiraz A. Shah – Nature Microbiology
Large-scale phage cultivation for commensal human gut bacteria – Juntao Shen – Cell Host & Microbe
Methodology
Reducing bias in microbiome research: Comparing methods from sample collection to sequencing – Jolanda Kool – Frontiers in Microbiology
In Vitro Modelling of Oral Microbial Invasion in the Human Colon – Lucie Etienne-Mesmin – Microbiology Spectrum
Bioinformatics
Improved eukaryotic detection compatible with large-scale automated analysis of metagenomes – Wojtek Bazant – Microbiome
Microbiome Digest - Bik's Picks 