Today’s digest features global antimicrobial resistance, comammox and anammox bacteria in wastewater treatment, mOTUs3, and more. Check out Elisa Granato & Christoph Ziegenhain’s story about postdoc life. Happy Friday and see you next week at #MVIF!
Global microbiome & resistome
Experimental temperatures shape host microbiome diversity and composition – Jingdi Li – Global Change Biology
Global biogeography and projection of soil antibiotic resistance genes – Zheng et al. – Science Advances
*Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance – Patrick Munk – Nature Communications
Blood microbiome
No evidence for a common blood microbiome based on a population study of 9,770 healthy humans – Cedric C.S. Tan – bioRxiv
Gut microbiome
Effects of dog ownership on the gut microbiota of elderly owners – Chaona Jiang – Plos One
Prokaryotic and viral genomes recovered from 787 Japanese gut metagenomes revealed microbial features linked to diets, populations, and diseases – Yoshihiko Tomofuji – Cell Genomics
Gut microbiome-wide association study of depressive symptoms – Djawad Radjabzadeh – Nature Communications
Development of non-alcoholic steatohepatitis is associated with gut microbiota but not oxysterol synthesis – Jacqueline Wyss – bioRxiv
The microbiome’s fiber degradation profile and its relationship with the host diet – Yotam Cohen & Elhanan Borenstein – BMC Biology
Animal microbiome
Lactobacillus reuteri improves the development and maturation of fecal microbiota in piglets through mother-to-infant microbe and metabolite vertical transmission – Gang Wang – Microbiome
Live biotherapeutics
Development of a live biotherapeutic throat spray with lactobacilli targeting respiratory viral infections – Irina Spacova – Microbial Biotechnology
Soil/root/plant microbiome
Differential microbial assembly processes and co-occurrence networks in the soil-root continuum along an environmental gradient – Yangquanwei Zhong – iMeta
Water microbiome
*Co-occurrence and cooperation between comammox and anammox bacteria in a full-scale attached growth municipal wastewater treatment process – Katherine J Vilardi – bioRxiv
Full-scale activated sludge transplantation reveals a highly resilient community structure – Giulia Dottorini – Water Research
Bioinformatics
Towards complete representation of bacterial contents in metagenomic samples – Xiaowen Feng, Heng Li – arXiv
*Cultivation-independent genomes greatly expand taxonomic-profiling capabilities of mOTUs across various environments – Hans-Joachim Ruscheweyh – Microbiome
Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2023 – CNCB-NGDC Members and Partners – Nucleic Acids Research
Nanopore long-read-only metagenomics enables complete and high-quality genome reconstruction from mock and complex metagenomes – Lei Liu – Microbiome
Microbiome Digest - Bik's Picks 