Have a nice weekend! In this digest: An interesting study about the effect of various dietary fibers (e.g., arabinoxylan, inulin) on the human microbiome (Lancaster, Cell Host & Microbe). Additionally, this digest includes more papers about maternal IgG interplay with neonatal microbiome.
Human and General Microbiome
Global, distinctive, and personal changes in molecular and microbial profiles by specific fibers in humans – Samuel M. Lancaster – Cell Host & Microbe
–> A preview for the paper: Stitching together a healthy gut microbiome with fiber – Thomas M Schmidt – Cell Host & Microbe
Maternal gut microbiome-induced IgG regulates neonatal gut microbiome and immunity – Katherine Z Sanidad – Science Immunology
Altered Metabolomics in Bipolar Depression With Gastrointestinal Symptoms – Xiang-Jie Guo – Frontiers in Psychiatry
Meta-analysis of mucosal microbiota reveals universal microbial signatures and dysbiosis in gastric carcinogenesis – Changan Liu – Oncogene
Gardnerella vaginalis induces matrix metalloproteinases in the cervicovaginal epithelium through TLR-2 activation – Kristin D Gerson – Journal of Reproductive Immunology
Beneficial Microbes and Compounds
Lactobacillus rhamnosus colonisation antagonizes Candida albicans by forcing metabolic adaptations that compromise pathogenicity – Raquel Alonso-Roman – Nature Communications
Honeys with anti-inflammatory capacity can alter the elderly gut microbiota in an ex vivo gut model – Daoyan Wu – Food Chemistry
Model Animal Microbiome
Human colon cancer-derived Clostridioides difficile strains drive colonic tumorigenesis in mice – Julia L Drewes – Cancer Discovery
Non-Model Animal Microbiome
Variation in gut microbiome structure across the annual hibernation cycle in a wild primate – Lydia K Greene – FEMS Microbiology Ecology
A high-throughput DNA sequencing study of fecal bacteria of seven Mexican horse breeds – Fernando Hernández-Quiroz – Archives of Microbiology
Species- and site-specific circulating bacterial DNA in Subantarctic sentinel mussels Aulacomya atra and Mytilus platensis – Sophia Ferchiou – Scientific Reports
Plant Microbiome
Review: The unsung roles of microbial secondary metabolite effectors in the plant disease cacophony – Lorena I Rangel – Current Opinion in Plant Biology
Plant-microbe interactions in the rhizosphere via a circular metabolic economy – Elisa Korenblum – The Plant Cell
Phyllosphere bacterial and fungal communities vary with host species identity, plant traits and seasonality in a subtropical forest – Mengjiao Li – Environmental Microbiome
Nitrogen availability determines plant growth promotion and the induction of root branching by the probiotic fungus Trichoderma atroviride in Arabidopsis seedlings – José López-Bucio – Archives of Microbiology
Environmental Microbiome
Review: Antibiotic resistant bacteria and genes in wastewater treatment plants: From occurrence to treatment strategies – Shengnan Li – The Science of the Total Environment
More Microbes
Perspective: Lessons From Insect Fungiculture: From Microbial Ecology to Plastics Degradation – Mariana O Barcoto – Frontiers in Microbiology
Insights into plastic biodegradation: community composition and functional capabilities of the superworm (Zophobas morio) microbiome in styrofoam feeding trials – Jiarui Sun – Microbial Genomics
Bioinformatics and Experimental Microbiome Analysis
DNA metabarcoding across disciplines: sequencing our way to greater understanding across scales of biological organization – Anna M Forsman – Integrative and Comparative Biology
Systematic cross-biospecimen evaluation of DNA extraction kits for long- and short-read multi-metagenomic sequencing studies – Jacqueline Rehner – Genomics, Proteomics & Bioinformatics