General microbiome
[REVIEW]Glycan processing in gut microbiomes – La Rosa et al. – Current Opinion in Microbiology
Multi-site human microbiome
[REVIEW]The Oral-Microbiome-Brain Axis and Neuropsychiatric Disorders: An Anthropological Perspective – Bowland & Weyrich – Frontiers in Psychiatry
Human oral microbiome
Microbial and molecular differences according to the location of head and neck cancers – Kim et al. – Cancer Cell International
Microbial differences between active and remission peri-implantitis – Hashimoto et al. – Scientific Reports
Human gut microbiome
Dynamics of the normal gut microbiota: A longitudinal one-year population study in Sweden – Olsson et al. – Cell Host & Microbe
Microbiota-microglia connections in age-related cognition decline – Zhou et al. – Aging Cell
Patients with psoriasis have a dysbiotic taxonomic and functional gut microbiota – Todberg – British Journal of Dermatology
[PREPRINT]Distinct Colon Mucosa Microbiomes associated with Tubular Adenomas and Serrated Polyps – Avelar-Barragan et al. – bioRxiv
Early prediction of incident liver disease using conventional risk factors and gut-microbiome-augmented gradient boosting – Liu et al. – Cell Metabolism
Insights from shotgun metagenomics into bacterial species and metabolic pathways associated with NAFLD in obese youth – Testerman et al. – Hepatology Commonications
Dietary Patterns and Gut Microbiota: the Crucial Actors in Inflammatory Bowel Disease – He et al. – Advances in Nutrition
A Guide to Dietary Pattern–Microbiome Data Integration – Choi et al. – The Journal of Nutrition
Functional Significance of Different Milk Constituents in Modulating the Gut Microbiome and Infant Health – Yadav et al. – J. Agric. Food Chem.
The gut microbiome as mediator between diet and its impact on immune function – Shi et al. – Scientific Reports
Differences in the intestinal microbiome associated with diarrhea during lenvatinib treatment for hepatocellular carcinoma – Inuai et al. – Digestive Diseases
16S rDNA sequencing analyzes differences in intestinal flora of human immunodeficiency virus (HIV) patients and association with immune activation – Mingjun et al. – Bioengineered
[REVIEW]Profile of Gut Microbiota of Adults with Diabetes Mellitus Type 1: A Systematic Review – Moreira et al. – Current Diabetes Reviews
Association between systemic lupus erythematosus and disruption of gut microbiota: a meta-analysis – Xiang et al. – Immunology and Inflammation
[REVIEW]The Bridge Between Ischemic Stroke and Gut Microbes: Short-Chain Fatty Acids – Fang et al. – Cellular and Molecular Neurobiology
Animal experiments (mouse/rat experiments, chickens/pigs on different diets)
Prophylactic effects of hyperforin on anhedonia-like phenotype in chronic restrain stress model: A role of gut microbiota – Zhang et al. – Letters in Applied Microbiology
Metabolome and microbiome multi-omics integration from a murine lung inflammation model of bronchopulmonary dysplasia – Saie et al. – Pediatric Research
Microbiome applications for laying hen performance and egg production – Ricke, Dittoe & Olson – Poultry Science
Animal microbiome (for animals in the wild)
[PREPRINT]The connection between the gut mycobiome community of natural black soldier fly populations and their environment – Vitenberg, Goldway & Opatovsky – bioRxiv
Inhibitory Bacterial Diversity and Mucosome Function Differentiate Susceptibility of Appalachian Salamanders to Chytrid Fungal Infection – Jimenez et al. – Applied and Environmental Microbiology
Composition and short-term stability of gut microbiota in lean and spontaneously overweight healthy Labrador retriever dogs – Söder et al. – Acta Veterinaria Scandinavica
Alterations in common marmoset gut microbiome associated with duodenal strictures – Sheh et al. – Scientific Reports
Plant, root, and soil microbiome
Spatial organization of the kelp microbiome at micron scales – Ramirez-Puebla et al. – Microbiome
Water and extremophile microbiome (sea, rivers, lakes, glaciers, permafrost, high-salt)
Metagenomics reveals global-scale contrasts in nitrogen cycling and cyanobacterial light-harvesting mechanisms in glacier cryoconite – Marakami et al. – Microbiome
Bacterial communities in surface and basal ice of a glacier terminus in the headwaters of Yangtze River on the Qinghai–Tibet Plateau – Ren et al. – Envionmental Microbiome
Built environment (subways, indoor surfaces)
Multikingdom interactions govern the microbiome in subterranean cultural heritage sites – Liu et al. – PNAS
Indoor green can modify the indoor dust microbial communities – Dockx et al. – Indoor Air
Forensics
Microbial community succession of submerged bones in an aquatic habitat – Kaszubinski et al . – Journal of Forensic Sciences
Bioinformatics
Metagenomic strain detection with SameStr: identification of a persisting core gut microbiota transferable by fecal transplantation – Podlesny et al. – Microbiome
[PREPRINT]Detection of Parasites in Microbiomes using Metagenomics – Kirstagler, Aarestrup & Pamp – bioRxiv
Techniques
Tryptophan Supplementation Increases the Production of Microbial-Derived AhR Agonists in an In Vitro Simulator of Intestinal Microbial Ecosystem – Koper et al. – J. Agric. Food Chem.