Human oral and skin microbiome

Oral HPV associated with differences in oral microbiota beta diversity and microbiota abundance – Zhang et al. – The Journal of Infectious Diseases

The Skin and Nose Microbiome and Its Association with Filaggrin Gene Mutations in Pediatric Atopic Dermatitis – van Mierlo et al. – Dermatology

Human gut microbiome

Associations of Childhood and Perinatal Blood Metals with Children’s Gut Microbiomes in a Canadian Gestation Cohort – Shen et al. – Environmental Health Perspectives

Patient knowledge of gut microbiota and acceptability of fecal microbiota transplantation in various diseases – Benech et al. – Neurogastroenterology & Motility

[PREPRINT]Comprehensive assessment of functional effects of commonly used sweeteners on ex vivo human gut microbiome – Sun et al. – bioRxiv

Fusobacterium nucleatum and Bacteroides fragilis detection in colorectal tumours: Optimal target site and correlation with total bacterial load – Rye et al. – PLOS One

Human gut microbiome aging clocks based on taxonomic and functional signatures through multi-view learning – Chen et al. – Gut Microbes

[REVIEW]The gut microbiome can be a potential regulator and treatment target of bone metastasis – Contino, Yadav & Shiozawa – Biochemical Pharmacology

Animal microbiome

Comparative analysis of gut microbial composition and potential functions in captive forest and alpine musk deer – Jiang et al. – Environmental Biotechnology

Effects of dietary antimicrobial peptides on intestinal morphology, antioxidant status, immune responses, microbiota and pathogen disease resistance in grass carp Ctenopharyngodon idellus – Liu et al. – Microbial Pathogenesis

[PREPRINT]Microbiomes of hadal fishes contain similar taxa, obligate symbionts, and known piezophiles across trench habitats – Blanton et al. – bioRxiv

Association of human disturbance and gastrointestinal parasite infection of yellow baboons in western Tanzania – Mason et al. – PLOS One

Bacterial recognition by PGRP-SA and downstream signalling by Toll/DIF sustain commensal gut bacteria in Drosophila – Bahuguna et al. – PLOS Genetics

[PREPRINT]Meta-analysis of the black soldier fly (Hermetia illucens) microbiota based on 16S rRNA gene amplicon sequencing – Idema et al. – bioRxiv

Groundwater microbiome

Vertical stratification of microbial communities and isotope geochemistry tie groundwater denitrification to sampling location within a nitrate-contaminated aquifer – Chakraborty et al. – Science of The Total Environment

Techniques / Bioinformatics

Microbiome differential abundance methods produce different results across 38 datasets – Nearing et al. – Nature Communications

[PREPRINT]Using strain-resolved analysis to identify contamination in metagenomics data – Lou et al. – bioRxiv

Revealing General Patterns of Microbiomes That Transcend Systems: Potential and Challenges of Deep Transfer Learning – David et al. – mSystems