October 30, 2020

COVID19
Cancer inpatients with COVID-19: A report from the Brazilian National Cancer Institute – de Melo et al. – PLOS One

Few bacterial co-infections but frequent empiric antibiotic use in the early phase of hospitalized patients with COVID-19: results from a multicentre retrospective cohort study in The Netherlands – Karami – et al. – Infectious Diseases

Infection of dogs with SARS-CoV-2 – Sit et al. – Nature

General microbiome/metabolome

Metabolomics of primary cutaneous melanoma and matched adjacent extratumoral microenvironment – Taylor et al. PLOS One

Human gut microbiome

Microbial signature in IgE-mediated food allergies – Goldberg et al. – Genome Medicine

Gut microbiota profiles of treatment-naïve adult acute myeloid leukemia patients with neutropenic fever during intensive chemotherapy – Rattanathammethee et al. – PLOS One

[Book Chapter]Understanding Polyphenols’ Health Effects Through the Gut Microbiota – Selma et al. – Dietary Polyphenols : Their Metabolism and Health Effects

[REVIEW]Gut Microbiota: Its Potential Roles in Pancreatic Cancer – Li et al. – Front. Cell. Infect. Microbiol.

Plant, root, and soil microbiome

Biological invasions alter environmental microbiomes: A meta-analysis – Malacrino et al. – PLOS One

Phages and viruses

[PREPRINT]VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature – Zablocki et al. – bioRxiv

Mycobiome
[REVIEW]T cell immunity to commensal fungi – Scheffold, Bacher & LeibundGut-Landmann – Current Opinion in Microbiology

Bioinformatics

Prometheus, an omics portal for interkingdom comparative genomic analyses – Ko et al. – PLOS One

Microbes in the news (popular press, EurekAlert, ScienceDaily, Youtube, NPR, etc)

News in Brie! Scientists discover cheese is so smelly because it helps microbes ‘talk’ to the bacteria that makes it ripe – S. Howes – Daily Mail

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