Highlights: Colonocyte metabolism shapes the gut microbiota, skin and gut microbiome of wild mammals, bacterial diversity in waterholes of Kruger National Park, Yeast diversity of glaciers, Laser MICROSAMPLING of soil community, origin & evolution of global RNA virome, Lymphoma virome dynamics, PUMA-for processing 16S rRNA taxonomy data for analysis and visualization and many more.
General microbiome
Contamination in Low Microbial Biomass Microbiome Studies: Issues and Recommendations – Raphael Eisenhofer – Trends in Microbiology
Review: Gut microbiota – our new important organ – Rositsa Sandeva – Albanian Journal of Agricultural Sciences
Human gut microbiome
Altered gut microbiota after traumatic splenectomy is associated with endotoxemia – Hua Zhu – Emerging Microbes & Infections
Review: Colonocyte metabolism shapes the gut microbiota – Yael Litvak – Science
Gut Microbiota Modulates Interactions Between Polychlorinated Biphenyls and Bile Acid Homeostasis – Sunny Lihua Cheng – Toxilogical Sciences
Animal experiments
An intensive milk replacer feeding program benefits immune response and intestinal microbiota of lambs during weaning – Qian Zhang – BMC Veterinary Research
Animal microbiome
Bacterial diversity in the waterholes of the Kruger National Park: an eDNA metabarcoding approach – Maxwell J Farrell – Genome
Skin and gut microbiomes of a wild mammal respond to different environmental cues – Anton Lavrinienko – BMC Microbiome
Meta-Omics Tools in the World of Insect-Microorganism Interactions – Antonino Malacrinò – MDPI
Land Use Influences Antibiotic Resistance in the Microbiome of Soil Collembolans Orchesellides sinensis – Dong Zhu – Environmental Science and Technology
The equine gastrointestinal microbiome: Impacts of age and obesity – Philippa K. Morrison – Systems Microbiology
Changes in gut bacterial communities in canaries infected by Macrorhabdus ornithogaster – Patrizia Robino – Journal of Avian Pathology
Plant, root, and soil microbiome
Laser MICROSAMPLING of soil microbial community –
Poplar phyllosphere harbors disparate isoprene-degrading bacteria – Andrew T. Crombie – PNAS
Changes in litter quality induced by N deposition alter soil microbial communities – Yingbin Li – Soil Biology and Biochemistry
Analysis of Bacterial Communities in White Clover Seeds via High-Throughput Sequencing of 16S rRNA Gene – Wenna Gao – Current Microbiology
Impact of Bactrocera oleae on the fungal microbiota of ripe olive drupes – Ahmed Abdelfattah – PLoS One
Water and extremophile microbiome
Preprint: Extent of the annual Gulf of Mexico hypoxic zone influences microbial community structure – Lauren Gillies Campbell – bioRxiv
Review: Microbiologically influenced corrosion and current mitigation strategies: A state of the art review – Bhavya Kachiprath – Data in Brief
Bacterial Communities in Areas of Oil and Methane Seeps in Pelagic of Lake Baikal –
Phages and viruses
Origins and Evolution of the Global RNA Virome – Yuri I. Wolf – mBio
Lymphoma Virome Dynamics Revealed By Cell-Free DNA Sequencing – Joseph G Schroers-Martin – Blood
Techniques
Inner Workings: Mapping the microbiome location helps elucidate its role – Marcus Woo – PNAS
Preprint: FDA-ARGOS: A Public Quality-Controlled Genome Database Resource for Infectious Disease Sequencing Diagnostics and Regulatory Science Research – Heike Sichtig – bioRxiv
Preprint: PUMA: A tool for processing 16S rRNA taxonomy data for analysis and visualization – Keith Mitchell – bioRxiv
EMA-amplicon-based taxonomic characterisation of the viable bacterial community present in untreated and SODIS treated roof-harvested rainwater – André Strauss -Environmental Science: Water Research & Technology