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Human gut microbiome
Associations Between Gut Microbiome and 24-Hour Blood Pressure Variability: A Cross-sectional Study Highlighting Sex Differences and Potential Therapeutic Targets – Preeti Dinesh Virwani – bioRxiv
Infant gut microbiota in multi-child families converges with adults without a sibling-specific signature – Eveliina Hanski – bioRxiv
Shaping the future of probiotics, live biotherapeutic products, and fecal microbiota transplantation: 30 scientific recommendations from the CHINAGUT Conference – Weihong Wang – iMeta
A widespread hydrogenase supports fermentative growth of gut bacteria in healthy people – Caitlin Welsh – Nature Miicrobiology
Long-read metagenomics for strain tracking after faecal microbiota transplant – Yu Fan – Nature Microbiology
Host transcriptional responses to gut microbiome variation arising from urbanism – Sabrina Arif – bioRxiv
Soft Drink Consumption and Depression Mediated by Gut Microbiome Alterations – Sharmili Edwin Thanarajah – JAMA Psychiatry
Oral microbiome
A high-quality genomic catalog of the human oral microbiome broadens its phylogeny and clinical insights – Jun Hyung Cha – Cell Host & Microbe
Urinary tract microbiome
Daily and Weekly Fluctuations in the Microbiome of the Urinary Tract of Postmenopausal Women with No History of Urinary Tract Infections – Jacob Hogins – bioRxiv
Animal experiments
Microbial succession at weaning is guided by microbial metabolism of host glycans – Jean-Bernard Lubin – Microbiome
Animal microbiome
Temporal establishment of the colon microbiota in Angus calves from birth to post-weaning – Michelle M. Stafford – PlosOne
Viruses and phages
Phage diversity mirrors bacterial strain diversity in the honey bee gut microbiota – Malick Ndiaye – Nature Communications
Plant, root and soil microbiome
Host species and geographic location shape microbial diversity and functional potential in the conifer needle microbiome – Robert M. Bowers – Microbiome
Soil bacterial, fungal, and protistan assembly processes across a 1300 km climate and land-use transect – Mingming Du – Catena
Drinking water microbiome
Microbial drinking water quality deterioration during distribution and household usage, determined together with citizen scientists – Paul W. J. J. van der Wielen – PlosOne
Bioinformatics
annoSnake: a Snakemake workflow for taxonomic and functional annotation of metagenomes and metagenome-assembled genomes (MAGs) – Bastian Heimburger – bioRxiv
Microbiome Digest - Bik's Picks 