General microbiome

[Resource]BugSigDB captures patterns of differential abundance across a broad range of host-associated microbial signatures – Geistlinger et al. – Nature Biotechnology

Human oral microbiome

[REVIEW]The oral microbiome: diversity, biogeography and human health – Baker et al. – Nature Reviews Microbiology

Dysbiosis of oral microbiome persists after dental treatment-induced remission of periodontal disease and dental caries – Yama et al. – mSystems

Human nearly-sterile sites (blood, organs, brain)

Proton pump inhibitor treatment aggravates bacterial translocation in patients with advanced cirrhosis and portal hypertension – Sturm et al. – mBio

Human gut microbiome

A faecal metabolite signature of impaired fasting glucose: results from two independent population-based cohorts – Nogal et al. – Diabetes

Composition and functional profiles of gut microbiota reflect the treatment stage, severity, and etiology of acute pancreatitis – Wang et al. – Microbiology Spectrum

Animal microbiome

Langerhans cells shape postnatal oral homeostasis in a mechanical-force-dependent but microbiota and IL17-independent manner – Jaber et al. – Nature Communications

Specific pathway abundances in the neonatal calf faecal microbiome are associated with susceptibility to Cryptosporidium parvum infection: a metagenomic analysis – Hares et al. – Animal Microbiome

Phage-microbe dynamics after sterile faecal filtrate transplantation in individuals with metabolic syndrome: a double-blind, randomised, placebo-controlled clinical trial assessing efficacy and safety – Wortelboer et al. – Nature Communications

Gut microbiota of old mice worsens neurological outcome after brain ischemia via increased valeric acid and IL-17 in the blood – Zeng et al. – Microbiome

Plant, root, and soil microbiome

Different bacterial and fungal community patterns in restored habitats in coal-mining subsidence areas – Wang et al. – Environmental Science and Pollution Research